View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9917A_low_324 (Length: 227)
Name: NF9917A_low_324
Description: NF9917A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9917A_low_324 |
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Alignment Details
Target: chr8 (Bit Score: 168; Significance: 3e-90; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 168; E-Value: 3e-90
Query Start/End: Original strand, 3 - 185
Target Start/End: Complemental strand, 10860393 - 10860213
Alignment:
| Q |
3 |
aaactgaaacttgaaataaatggacgaaattaagagtaaacaaatagaacaatacagcatactgaaaaatgttcttgagtttgttattcaaaagataaca |
102 |
Q |
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| T |
10860393 |
aaactgaaacttgaaataaatggacaaaattaagagtaaacaaatagaacaatacagcatactgaaaaatgttcttgagtttgttattcaaaagataaca |
10860294 |
T |
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| Q |
103 |
tacaagaacacagtattttcttttatgattaatagtacatatatatatcaaacaatacaaggccatatttattcttcatggca |
185 |
Q |
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| T |
10860293 |
tacaagaacacagtattttcttttatgattaatagtacatat--atatcaaacaatacaaggccatatttattcttcatggca |
10860213 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 4 - 222
Target Start/End: Complemental strand, 10905510 - 10905297
Alignment:
| Q |
4 |
aactgaaacttgaaataaatggacgaaattaagagtaaacaaatagaaca-atacagcatactgaaaaatgttcttgagtttgttattcaaaagataaca |
102 |
Q |
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| T |
10905510 |
aactgaaacttgaaataaatggacaaaataaagagtgaataaacagaaccgatatgtcatacggaaaaatgttcttgagtttgt-atccaaaagataaca |
10905412 |
T |
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| Q |
103 |
tacaagaacacagtattttctttt---atgattaatagtacatatatatatcaaacaatacaaggccatatttattcttcatggcagccagccaataaac |
199 |
Q |
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| T |
10905411 |
tagaagaacacagtattttcttttataatgattaacagtac----gtacatcaaaaaatacaaggccatctttgtagttcatgg----caaccaataaac |
10905320 |
T |
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| Q |
200 |
ttgcatacaataacacacattgt |
222 |
Q |
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| T |
10905319 |
ttgcatgcaatcacacacattgt |
10905297 |
T |
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