View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9917A_low_325 (Length: 227)
Name: NF9917A_low_325
Description: NF9917A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9917A_low_325 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 157; Significance: 1e-83; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 19 - 212
Target Start/End: Original strand, 1968757 - 1968950
Alignment:
| Q |
19 |
agaaactaaccaacaactaannnnnnncaaatgtaaagttttcacctactgttataaaagattatggtatctatataaatgaattaacgattatcaaatt |
118 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
1968757 |
agaaactaaccaacaactaatttttttcaaatgtaaagttttcacccactattataaaagattatggtatctatataaatgaattaacaattatcaaatt |
1968856 |
T |
|
| Q |
119 |
aattgagatcctatattacgatttttaatatgtcacctgaccttagaatttcccattctattcttatgattccatattatttgtttctttgtta |
212 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1968857 |
aattgagatcctatattacgatttttaatatgtcacctgaccttggaatttcccattctattcttatgattccatattatttgtttctttgtta |
1968950 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University