View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9917A_low_327 (Length: 227)
Name: NF9917A_low_327
Description: NF9917A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9917A_low_327 |
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Alignment Details
Target: chr2 (Bit Score: 177; Significance: 1e-95; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 177; E-Value: 1e-95
Query Start/End: Original strand, 12 - 212
Target Start/End: Complemental strand, 14536317 - 14536117
Alignment:
| Q |
12 |
agatggataaagattatagcttgaaatataaatgagaacaagtttataaactcgactaagaatttcagacataaaaaataaatgaataggttttgatatt |
111 |
Q |
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| T |
14536317 |
agatggataaaaattatagcttgaaatataaatgagaactagtttataaactcgactaagaatttcagacataaaaaataaatgaataggttttaatatt |
14536218 |
T |
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| Q |
112 |
agcaagacaacaaaagagggcatgaggcatgactaacagcctaacacaggatataaactagataagatcaatatagaacaactgaagataaaatgatgtc |
211 |
Q |
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| T |
14536217 |
agcaagacaacaaaagagggcatgaggcatgactaacagtctaccacagaatataaactagataagatcaatatagaacaactgaagataaaatgatgtc |
14536118 |
T |
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| Q |
212 |
c |
212 |
Q |
| |
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| |
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| T |
14536117 |
c |
14536117 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 15 - 189
Target Start/End: Complemental strand, 14531400 - 14531223
Alignment:
| Q |
15 |
tggataaagattatagcttgaaatataaatgagaacaagtttataaactcgactaagaatttcagacataaaaaataaatga---ataggttttgatatt |
111 |
Q |
| |
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|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| | ||||||| |||||| |||| |||| | ||| |
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| T |
14531400 |
tggataaagattatagcttgaaatataagtgagaacaagtttataaactcgactaagaatttcagtcgtaaaaaacaaatgaatcatagattttaagatt |
14531301 |
T |
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| Q |
112 |
agcaagacaacaaaagagggcatgaggcatgactaacagcctaacacaggatataaactagataagatcaatatagaa |
189 |
Q |
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|| |||||||||||||||||||| |||||||||||||| |||||||| ||||||| |||||||| ||||||||| |
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| T |
14531300 |
agtaagacaacaaaagagggcatagggcatgactaacagtctaacacaaactataaacaagataagaataatatagaa |
14531223 |
T |
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