View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9917A_low_332 (Length: 226)
Name: NF9917A_low_332
Description: NF9917A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9917A_low_332 |
 | |
|
| [»] scaffold0001 (1 HSPs) |
| | |
|
| [»] scaffold1412 (1 HSPs) |
| | |
|
| [»] chr4 (3 HSPs) |
| |
|
| [»] scaffold0525 (1 HSPs) |
| | |
|
| [»] scaffold0263 (1 HSPs) |
| |
|
| [»] scaffold0862 (1 HSPs) |
| | |
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Alignment Details
Target: chr8 (Bit Score: 143; Significance: 3e-75; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 27 - 216
Target Start/End: Original strand, 26175147 - 26175339
Alignment:
| Q |
27 |
atggttaagcgttttgccttaattggctttgttgatgattgcttctacctgatggtggttaagcgttgcattgatgcttcttccttcaattggttcaacc |
126 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||| | |
|
|
| T |
26175147 |
atggttaagcgtggtgccttaattggctttgttgatgattgcttctaccggatggtggttaagcgttgctttgatgcttcttccttcaattggttcaatc |
26175246 |
T |
|
| Q |
127 |
ttgagttgtggttgcttcttgttggataagcacttgtttgatgacta---tgtttttagccgatgtgtttccagcatctttccttgtattttc |
216 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||| || |||||||||||||||||||| |
|
|
| T |
26175247 |
ttgagttttggttgcttcttgttggataagcacttgtttgatgactattttttttttagccgatgtgttcccggcatctttccttgtattttc |
26175339 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 51 - 216
Target Start/End: Complemental strand, 7275529 - 7275363
Alignment:
| Q |
51 |
ggctttgttgatgattg-cttctacctgatggtggttaagcgttgcattgatgcttcttccttcaa-ttggttcaaccttgagttgtggttgcttcttgt |
148 |
Q |
| |
|
||||||||||||||||| |||||||| |||||||||||||||||| ||| ||||||||||| ||| || || |||||||||||||||| | |||||| |
|
|
| T |
7275529 |
ggctttgttgatgattggcttctaccggatggtggttaagcgttggtttgctgcttcttcctccaaggtgattacaccttgagttgtggtttcctcttgt |
7275430 |
T |
|
| Q |
149 |
tggataagcacttgtttgatgactatgtttttagccgatgtgtttccagcatctttccttgtattttc |
216 |
Q |
| |
|
||||||||| ||| ||| || ||||||| || ||| |||| |||| |||||||||||||||||||| |
|
|
| T |
7275429 |
tggataagcctttgattgttg-ctatgttcttggccaatgtatttctggcatctttccttgtattttc |
7275363 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 28 - 72
Target Start/End: Original strand, 4677507 - 4677551
Alignment:
| Q |
28 |
tggttaagcgttttgccttaattggctttgttgatgattgcttct |
72 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
4677507 |
tggttaagcgttgtgccttaattggctttgttgatgattgcttct |
4677551 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 39
Target Start/End: Original strand, 26175029 - 26175067
Alignment:
| Q |
1 |
gccatgtggataagcttccgtcatgaatggttaagcgtt |
39 |
Q |
| |
|
||||||| ||||||||| ||||||||||||||||||||| |
|
|
| T |
26175029 |
gccatgttgataagctttcgtcatgaatggttaagcgtt |
26175067 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 130; Significance: 2e-67; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 27 - 216
Target Start/End: Original strand, 4607167 - 4607356
Alignment:
| Q |
27 |
atggttaagcgttttgccttaattggctttgttgatgattgcttctacctgatggtggttaagcgttgcattgatgcttcttccttcaattggttcaacc |
126 |
Q |
| |
|
||||||||||||| |||| ||||||||||||| |||| | ||||||||| ||||||| ||||||||||| |||||||||| |||| ||||||||||||| |
|
|
| T |
4607167 |
atggttaagcgttgtgccctaattggctttgtcgatgttggcttctaccggatggtgtttaagcgttgctttgatgcttcatcctgaaattggttcaacc |
4607266 |
T |
|
| Q |
127 |
ttgagttgtggttgcttcttgttggataagcacttgtttgatgactatgtttttagccgatgtgtttccagcatctttccttgtattttc |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| || ||||||||||||||||||| |
|
|
| T |
4607267 |
ttgagttgtggttgcttcttgttggataagcacttgtttgatgactttgtttttagccgatgtgttcccgacatctttccttgtattttc |
4607356 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 53 - 94
Target Start/End: Original strand, 10745351 - 10745392
Alignment:
| Q |
53 |
ctttgttgatgattgcttctacctgatggtggttaagcgttg |
94 |
Q |
| |
|
|||||||| || ||||||||||| |||||||||||||||||| |
|
|
| T |
10745351 |
ctttgttggtgcttgcttctaccagatggtggttaagcgttg |
10745392 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0001 (Bit Score: 125; Significance: 2e-64; HSPs: 1)
Name: scaffold0001
Description:
Target: scaffold0001; HSP #1
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 27 - 216
Target Start/End: Complemental strand, 145053 - 144862
Alignment:
| Q |
27 |
atggttaagcgttttgccttaattggctttgttgatgattgcttctacctgatggtggttaagcgttgcattgatgcttcttccttcaattggttcaacc |
126 |
Q |
| |
|
||||||||||||| |||||| ||||||||| ||| | ||||||||| ||||||||||||||||||| |||||||| ||||||||||||||||||||| |
|
|
| T |
145053 |
atggttaagcgttgtgccttttatggctttgtggatattggcttctaccggatggtggttaagcgttgctttgatgctccttccttcaattggttcaacc |
144954 |
T |
|
| Q |
127 |
ttgagttgtggttgcttcttgttggataagcacttgtttgatgac--tatgtttttagccgatgtgtttccagcatctttccttgtattttc |
216 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||||| ||| |||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
144953 |
ttgagttgtggttgcttcttgttggataagctcttgtttgatgactatatttttttagccgatgtgtttccggcatctttccttgtattttc |
144862 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 125; Significance: 2e-64; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 27 - 216
Target Start/End: Complemental strand, 6823427 - 6823236
Alignment:
| Q |
27 |
atggttaagcgttttgccttaattggctttgttgatgattgcttctacctgatggtggttaagcgttgcattgatgcttcttccttcaattggttcaacc |
126 |
Q |
| |
|
||||||||||||| |||||| ||||||||| ||| | ||||||||| ||||||||||||||||||| |||||||| ||||||||||||||||||||| |
|
|
| T |
6823427 |
atggttaagcgttgtgccttttatggctttgtggatattggcttctaccggatggtggttaagcgttgctttgatgctccttccttcaattggttcaacc |
6823328 |
T |
|
| Q |
127 |
ttgagttgtggttgcttcttgttggataagcacttgtttgatgac--tatgtttttagccgatgtgtttccagcatctttccttgtattttc |
216 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||||| ||| |||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
6823327 |
ttgagttgtggttgcttcttgttggataagctcttgtttgatgactatatttttttagccgatgtgtttccggcatctttccttgtattttc |
6823236 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 119; Significance: 6e-61; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 119; E-Value: 6e-61
Query Start/End: Original strand, 28 - 202
Target Start/End: Complemental strand, 35267893 - 35267719
Alignment:
| Q |
28 |
tggttaagcgttttgccttaattggctttgttgatgattgcttctacctgatggtggttaagcgttgcattgatgcttcttccttcaattggttcaacct |
127 |
Q |
| |
|
|||||||| ||| ||||||||||||| |||||||||||||||||| || ||||||||||||||||||| |||||||||| |||||||| |||| ||||| |
|
|
| T |
35267893 |
tggttaagtgttgtgccttaattggcattgttgatgattgcttctgccggatggtggttaagcgttgctttgatgcttcatccttcaagcggttaaacct |
35267794 |
T |
|
| Q |
128 |
tgagttgtggttgcttcttgttggataagcacttgtttgatgactatgtttttagccgatgtgtttccagcatct |
202 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||||| || ||||||||||||||||||| |||||| |
|
|
| T |
35267793 |
tgagttgtggtttcttcttgttggataagcacttgtttgatgactttgcttttagccgatgtgtttccggcatct |
35267719 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 27 - 223
Target Start/End: Complemental strand, 9906226 - 9906032
Alignment:
| Q |
27 |
atggttaagcgttttgccttaattggctttgttgatgattg-cttctacctgatggtggttaagcgttgcattgatgcttcttccttcaattggttcaac |
125 |
Q |
| |
|
||||||||||||| |||||| |||||||||| |||||| |||||||| |||||||||||||||||| ||| ||||||| || ||| || || || |
|
|
| T |
9906226 |
atggttaagcgttgtgccttttaaggctttgttgttgattggcttctaccggatggtggttaagcgttggtttgttgcttct--ctccaagtgattacac |
9906129 |
T |
|
| Q |
126 |
cttgagttgtggttgcttcttgttggataagcacttgtttgatgactatgtttttagccgatgtgtttccagcatctttccttgtattttcatttgct |
223 |
Q |
| |
|
|||||||||||||| | |||||||||||| ||| ||| ||| || |||| | || |||||||| || || |||||||| |||||| |||||||||| |
|
|
| T |
9906128 |
cttgagttgtggtttcctcttgttggataggcatttggttgttg-ctattctcttggccgatgtattcccgacatctttcattgtatattcatttgct |
9906032 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 27 - 117
Target Start/End: Complemental strand, 18703478 - 18703387
Alignment:
| Q |
27 |
atggttaagcgttttgccttaattggctttgttgatgattg-cttctacctgatggtggttaagcgttgcattgatgcttcttccttcaatt |
117 |
Q |
| |
|
||||||||||||| |||||| |||| |||||||||||| |||||||| |||||||||||||||||| ||| ||||||||||| ||||| |
|
|
| T |
18703478 |
atggttaagcgttgtgccttttaaggctctgttgatgattggcttctaccggatggtggttaagcgttggtttgttgcttcttcctccaatt |
18703387 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 39
Target Start/End: Complemental strand, 35268029 - 35267991
Alignment:
| Q |
1 |
gccatgtggataagcttccgtcatgaatggttaagcgtt |
39 |
Q |
| |
|
||||||| |||||||||| |||||||||||||||||||| |
|
|
| T |
35268029 |
gccatgttgataagcttctgtcatgaatggttaagcgtt |
35267991 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 115; Significance: 1e-58; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 115; E-Value: 1e-58
Query Start/End: Original strand, 27 - 216
Target Start/End: Original strand, 34512552 - 34512746
Alignment:
| Q |
27 |
atggttaagcgttttgccttaattggctttgttgatgattgcttctacctgatggtggttaagcgttgcattgatgcttcttccttcaattggttcaacc |
126 |
Q |
| |
|
||||||||||||| |||||| ||||||||| || | ||||||||| ||||||||||||||||||| |||||||| |||| |||||||||||||||| |
|
|
| T |
34512552 |
atggttaagcgttatgccttttatggctttgtgaatattggcttctaccggatggtggttaagcgttgctttgatgctccttcattcaattggttcaacc |
34512651 |
T |
|
| Q |
127 |
ttgagttgtggttgcttcttgttggataagcacttgtttgatgactatg-----tttttagccgatgtgtttccagcatctttccttgtattttc |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
34512652 |
ttgagttgtggttgcttcttgttggataagcacttgcttgatgactatgttttttttttagccgatgtgtttccggcatctttccttgtattttc |
34512746 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 27 - 216
Target Start/End: Original strand, 41832335 - 41832525
Alignment:
| Q |
27 |
atggttaagcgttttgccttaattggctttgttgatgattg-cttctacctgatggtggttaagcgttgcattgatgcttcttccttcaattggtt-caa |
124 |
Q |
| |
|
||||||||||||| |||||| ||||||||||||||||| |||||||| |||||||||||||||||| ||| ||||||||||| ||| ||||| || |
|
|
| T |
41832335 |
atggttaagcgttgtgccttttaaggctttgttgatgattggcttctaccagatggtggttaagcgttggtttgttgcttcttcctccaagtggttacac |
41832434 |
T |
|
| Q |
125 |
ccttgagttgtggttgcttcttgttggataagcacttgtttgatgactatgtttttagccgatgtgtttccagcatctttccttgtattttc |
216 |
Q |
| |
|
||||||||||||||| | |||||||||||||||| ||| ||| || |||||| || ||| |||| |||| |||||||||||||||||||| |
|
|
| T |
41832435 |
ccttgagttgtggtttcctcttgttggataagcatttgattgttg-ttatgttcttggccaatgtatttctggcatctttccttgtattttc |
41832525 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 27 - 226
Target Start/End: Original strand, 7737011 - 7737209
Alignment:
| Q |
27 |
atggttaagcgttttgccttaattggctttgttgatgattgcttctacctgatggtggttaagcgttgcattgatgcttcttccttcaattggttcaacc |
126 |
Q |
| |
|
||||||||| ||| |||||| | ||||||||| |||| | ||||||| | ||||| ||||||||||| ||| ||||||||||| ||| ||||| |||| |
|
|
| T |
7737011 |
atggttaagtgttgtgccttcaatggctttgtggatgttggcttctatcggatggcagttaagcgttgttttgttgcttcttcctccaagtggttaaacc |
7737110 |
T |
|
| Q |
127 |
ttgagttgtggttgcttcttgttggataagcacttgtttgatgactatgtttttagccgatgtgtttccagcatctttccttgtattttcatttgcttga |
226 |
Q |
| |
|
||||||||||||| | |||||||| ||||||| ||| ||| | ||||| | || | |||||| ||||| ||||||||| |||||||||||||||||||| |
|
|
| T |
7737111 |
ttgagttgtggtttcctcttgttgaataagcatttggttg-tttctatgctcttggtcgatgtatttccggcatctttctttgtattttcatttgcttga |
7737209 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 28 - 226
Target Start/End: Complemental strand, 219448 - 219255
Alignment:
| Q |
28 |
tggttaagcgttttgccttaattggctttgttgatgattgcttctacctgatggtggttaagcgttgcattgatgcttcttccttcaattggttcaacct |
127 |
Q |
| |
|
|||||||||||| | || |||||| |||||||||||| ||||| || |||||||||||| ||||| ||| || || || |||||| |||| ||||| |
|
|
| T |
219448 |
tggttaagcgttgtcccctaattgtctttgttgatgacaacttctgccagatggtggttaaacgttgatttgttg-ttttttcttcaagcggttaaacct |
219350 |
T |
|
| Q |
128 |
tgagttgtggttgcttcttgttggataagcacttgtttgatgactatgtttttagccgatgtgtttccagcatctttccttgtattttcatttgcttga |
226 |
Q |
| |
|
|||||||| ||| ||||||||||||||||||||| |||||||||| | || || |||||||||| ||||| ||||||| ||||||||||||||| |
|
|
| T |
219349 |
tgagttgt-gtttcttcttgttggataagcactttcttgatgactagg---ttggctgatgtgtttcttacatctctccttgttttttcatttgcttga |
219255 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 141 - 221
Target Start/End: Original strand, 23612133 - 23612213
Alignment:
| Q |
141 |
cttcttgttggataagcacttgtttgatgactatgtttttagccgatgtgtttccagcatctttccttgtattttcatttg |
221 |
Q |
| |
|
|||| ||||||||||| | ||| ||| ||||||||||||| | |||||| ||||| |||| | ||||||| |||||||||| |
|
|
| T |
23612133 |
cttcatgttggataagtatttggttgttgactatgtttttggtcgatgtatttccggcatttctccttgtgttttcatttg |
23612213 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1412 (Bit Score: 102; Significance: 8e-51; HSPs: 1)
Name: scaffold1412
Description:
Target: scaffold1412; HSP #1
Raw Score: 102; E-Value: 8e-51
Query Start/End: Original strand, 27 - 180
Target Start/End: Complemental strand, 155 - 2
Alignment:
| Q |
27 |
atggttaagcgttttgccttaattggctttgttgatgattgcttctacctgatggtggttaagcgttgcattgatgcttcttccttcaattggttcaacc |
126 |
Q |
| |
|
||||||||||||| |||||| ||||||||| ||| | ||||||||| ||||||||||||||||||| |||||||| ||||||||||||||||||||| |
|
|
| T |
155 |
atggttaagcgttgtgccttttatggctttgtggatattggcttctaccggatggtggttaagcgttgctttgatgctccttccttcaattggttcaacc |
56 |
T |
|
| Q |
127 |
ttgagttgtggttgcttcttgttggataagcacttgtttgatgactatgttttt |
180 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||| ||||| |
|
|
| T |
55 |
ttgagttgtggttgcttcttgttggataagctcttgtttgatgactatattttt |
2 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 96; Significance: 3e-47; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 27 - 226
Target Start/End: Original strand, 5444422 - 5444620
Alignment:
| Q |
27 |
atggttaagcgttttgccttaattggctttgttgatgattgcttctacctgatggtggttaagcgttgcattgatgcttcttccttcaattggttcaacc |
126 |
Q |
| |
|
||||||||||||| |||||| |||||||||||||| | ||||||||| ||||||||||||||||||| ||| ||||||||||| ||| || ||| ||| |
|
|
| T |
5444422 |
atggttaagcgttgtgccttttatggctttgttgatgttggcttctaccggatggtggttaagcgttgctttgttgcttcttcctccaaatgattccacc |
5444521 |
T |
|
| Q |
127 |
ttgagttgtggttgcttcttgttggataagcacttgtttgatgactatgtttttagccgatgtgtttccagcatctttccttgtattttcatttgcttga |
226 |
Q |
| |
|
||||||||||||| | |||||||||||||||| ||| ||| || ||||| | || |||||||| ||||| |||||||| ||||||||||||||||||||| |
|
|
| T |
5444522 |
ttgagttgtggtttcctcttgttggataagcatttggttgttg-ctatgctcttggccgatgtatttccggcatctttacttgtattttcatttgcttga |
5444620 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 27 - 226
Target Start/End: Original strand, 11814847 - 11815044
Alignment:
| Q |
27 |
atggttaagcgttttgccttaattggctttgttgatgattgcttctacctgatggtggttaagcgttgcattgatgcttcttccttcaattggttcaacc |
126 |
Q |
| |
|
||||||||||||| || ||| ||||||||| || ||||||||||| ||||||||||||||||| ||| |||||||| | |||| |||| |||| |
|
|
| T |
11814847 |
atggttaagcgttgtgtcttttatggctttgtgcttgcttgcttctaccatatggtggttaagcgttgttttgttgcttctt-catcaagcggttaaacc |
11814945 |
T |
|
| Q |
127 |
ttgagttgtggttgcttcttgttggataagcacttgtttgatgactatgtttttagccgatgtgtttccagcatctttccttgtattttcatttgcttga |
226 |
Q |
| |
|
||||||||||||| | ||| |||||||||||| ||| ||| || ||||| | || |||||| |||| |||||| | |||||||||||||||| |||| |
|
|
| T |
11814946 |
ttgagttgtggtttcctctggttggataagcatttggttgttg-ctatgctcttggccgataaacttccggcatctctacttgtattttcatttgtttga |
11815044 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 39
Target Start/End: Original strand, 5444348 - 5444386
Alignment:
| Q |
1 |
gccatgtggataagcttccgtcatgaatggttaagcgtt |
39 |
Q |
| |
|
||||||| |||| |||||||||||||||||||||||||| |
|
|
| T |
5444348 |
gccatgttgatacgcttccgtcatgaatggttaagcgtt |
5444386 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 83; Significance: 2e-39; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 27 - 216
Target Start/End: Original strand, 24039188 - 24039377
Alignment:
| Q |
27 |
atggttaagcgttttgccttaattggctttgttgatgattg-cttctacctgatggtggttaagcgttgcattgatgcttcttccttcaattggttcaac |
125 |
Q |
| |
|
||||||||||||| |||||| ||||||||||||||||| |||||||| |||||||||||||||||| ||| ||||||||||| ||| ||||| || |
|
|
| T |
24039188 |
atggttaagcgttgtgccttttaaggctttgttgatgattggcttctaccagatggtggttaagcgttggtttgttgcttcttcctccaagtggttacac |
24039287 |
T |
|
| Q |
126 |
cttgagttgtggttgcttcttgttggataagcacttgtttgatgactatgtttttagccgatgtgtttccagcatctttccttgtattttc |
216 |
Q |
| |
|
|||||||||||||| | |||||||||||||||| ||| ||| || ||||||| || ||| |||| |||| ||||||||||||||||||||| |
|
|
| T |
24039288 |
cttgagttgtggtttcctcttgttggataagcatttgattgttg-ctatgttcttggccaatgtatttctagcatctttccttgtattttc |
24039377 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 27 - 216
Target Start/End: Complemental strand, 31269870 - 31269681
Alignment:
| Q |
27 |
atggttaagcgttttgccttaattggctttgttgatgattg-cttctacctgatggtggttaagcgttgcattgatgcttcttccttcaattggttcaac |
125 |
Q |
| |
|
||||||||||||| |||||| ||||||||||||||||| |||||||| |||||||||||||||||| || ||||||||||| ||| ||||| || |
|
|
| T |
31269870 |
atggttaagcgttgtgccttttaaggctttgttgatgattggcttctaccagatggtggttaagcgttggtctgttgcttcttcctccaagtggttacac |
31269771 |
T |
|
| Q |
126 |
cttgagttgtggttgcttcttgttggataagcacttgtttgatgactatgtttttagccgatgtgtttccagcatctttccttgtattttc |
216 |
Q |
| |
|
|||||||||||||| | |||||||||||||||| ||| ||| || ||||||| || ||| |||| |||| ||||||||||||||||||||| |
|
|
| T |
31269770 |
cttgagttgtggtttcctcttgttggataagcatttgattgttg-ctatgttcttggccaatgtatttctagcatctttccttgtattttc |
31269681 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 28 - 94
Target Start/End: Complemental strand, 36316650 - 36316583
Alignment:
| Q |
28 |
tggttaagcgttttgccttaattggctttgtt-gatgattgcttctacctgatggtggttaagcgttg |
94 |
Q |
| |
|
|||||||||||| ||||||||||||||||||| | || ||||||||||| |||||||||||||||||| |
|
|
| T |
36316650 |
tggttaagcgttgtgccttaattggctttgttggttgtttgcttctaccagatggtggttaagcgttg |
36316583 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 191 - 226
Target Start/End: Complemental strand, 36316559 - 36316524
Alignment:
| Q |
191 |
tttccagcatctttccttgtattttcatttgcttga |
226 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |
|
|
| T |
36316559 |
tttccagcatctttccttgtattttcatttgcttga |
36316524 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 80; Significance: 1e-37; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 27 - 216
Target Start/End: Original strand, 21256349 - 21256539
Alignment:
| Q |
27 |
atggttaagcgttttgccttaatt-ggctttgttgatgattg-cttctacctgatggtggttaagcgttgcattgatgcttcttccttcaattggttcaa |
124 |
Q |
| |
|
||||||||||||| |||||| | ||||||||||||||||| |||||||| |||||||||||||||||| ||| ||||||||||| ||| ||||| | |
|
|
| T |
21256349 |
atggttaagcgttgtgcctttttaaggctttgttgatgattggcttctaccagatggtggttaagcgttggtttgttgcttcttcctccaagtggttaca |
21256448 |
T |
|
| Q |
125 |
ccttgagttgtggttgcttcttgttggataagcacttgtttgatgactatgtttttagccgatgtgtttccagcatctttccttgtattttc |
216 |
Q |
| |
|
||||||||||||||| | |||||||||||||||| ||| ||| || ||||||| || ||| |||| |||| ||||||||||||||||||||| |
|
|
| T |
21256449 |
ccttgagttgtggtttcctcttgttggataagcatttgattgttg-ctatgttcttggccaatgtatttctagcatctttccttgtattttc |
21256539 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 28 - 220
Target Start/End: Original strand, 17823254 - 17823446
Alignment:
| Q |
28 |
tggttaagcgttttgccttaattggctttgttgatgattgcttctacctgatggtggttaagcgttgcattgatgcttcttccttcaattggttcaacct |
127 |
Q |
| |
|
|||||||||||| ||||||||| ||||||||||||||| |||| |||||| ||||| |||| ||| ||||||||||| ||| ||||| ||||| |
|
|
| T |
17823254 |
tggttaagcgttgtgccttaatcggctttgttgatgataatttctgttgaatggtgattaagggttgatttgttgcttcttcctccaagtggttaaacct |
17823353 |
T |
|
| Q |
128 |
tgagttgtggttgcttcttgttggataagcacttgtttgatgactatgtttttagccgatgtgtttccagcatctttccttgtattttcattt |
220 |
Q |
| |
|
||| || ||||| |||||||||| ||||||| ||| ||| |||||||| ||||||||||||| |||||||||||| || |||||||||||||| |
|
|
| T |
17823354 |
tgaattatggtttcttcttgttgaataagcatttgcttgttgactatgcttttagccgatgtatttccagcatctctcattgtattttcattt |
17823446 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 27 - 226
Target Start/End: Complemental strand, 41949773 - 41949575
Alignment:
| Q |
27 |
atggttaagcgttttgccttaattggctttgttgatgattgcttctacctgatggtggttaagcgttgcattgatgcttcttccttcaattggttcaacc |
126 |
Q |
| |
|
||||||||||||| |||||| ||||||||| |||| | ||||||||| ||||||||||||| |||| ||| ||||||||||| ||| ||||| || |
|
|
| T |
41949773 |
atggttaagcgttgtgccttttatggctttgtcgatgttggcttctaccggatggtggttaagtgttggtttgttgcttcttcctccaagtggttacaca |
41949674 |
T |
|
| Q |
127 |
ttgagttgtggttgcttcttgttggataagcacttgtttgatgactatgtttttagccgatgtgtttccagcatctttccttgtattttcatttgcttga |
226 |
Q |
| |
|
||||||||||||| | |||||||||||||||| ||| ||| || || | | || |||||| | ||||| |||||||||||||||||||||||||||||| |
|
|
| T |
41949673 |
ttgagttgtggtttcctcttgttggataagcatttggttgctg-ctcttctcttggccgatatatttccggcatctttccttgtattttcatttgcttga |
41949575 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 27 - 94
Target Start/End: Complemental strand, 35305024 - 35304957
Alignment:
| Q |
27 |
atggttaagcgttttgccttaattggctttgttgatgattgcttctacctgatggtggttaagcgttg |
94 |
Q |
| |
|
||||||||||||| |||||| ||||||||| | || ||||||||||| |||||||||||||||||| |
|
|
| T |
35305024 |
atggttaagcgttgtgccttttatggctttgtggttgtttgcttctaccggatggtggttaagcgttg |
35304957 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 101 - 226
Target Start/End: Complemental strand, 15544014 - 15543889
Alignment:
| Q |
101 |
tgcttcttccttcaattggttcaaccttgagttgtggttgcttcttgttggataagcacttgtttgatgactatgtttttagccgatgtgtttccagcat |
200 |
Q |
| |
|
||||||||||| ||| || | |||||| |||||||||| ||| |||||||||||||| | | |||||||||||||| | | ||||| ||| |||| |
|
|
| T |
15544014 |
tgcttcttcctccaagcgggtaaaccttaagttgtggtttctttttgttggataagcattcgcttgatgactatgttgacaactgatgtatttttggcat |
15543915 |
T |
|
| Q |
201 |
ctttccttgtattttcatttgcttga |
226 |
Q |
| |
|
| |||||||||||||||||| |||| |
|
|
| T |
15543914 |
ttctccttgtattttcatttgtttga |
15543889 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 124 - 216
Target Start/End: Original strand, 43233662 - 43233753
Alignment:
| Q |
124 |
accttgagttgtggttgcttcttgttggataagcacttgtttgatgactatgtttttagccgatgtgtttccagcatctttccttgtattttc |
216 |
Q |
| |
|
|||||||||||||||| | |||||||||||||||| ||| ||| || |||| | || | |||||| ||||| | |||||||||||||||||| |
|
|
| T |
43233662 |
accttgagttgtggtttcctcttgttggataagcatttggttgttg-ctattctcttggtcgatgtatttccggtatctttccttgtattttc |
43233753 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0525 (Bit Score: 62; Significance: 6e-27; HSPs: 1)
Name: scaffold0525
Description:
Target: scaffold0525; HSP #1
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 67 - 216
Target Start/End: Complemental strand, 2396 - 2248
Alignment:
| Q |
67 |
gcttctacctgatggtggttaagcgttgcattgatgcttcttccttcaattggttcaaccttgagttgtggttgcttcttgttggataagcacttgtttg |
166 |
Q |
| |
|
||||||||| |||||||||||||||||| ||| ||||||||||| ||| || || |||||||||||||||| | |||||||||||||||| ||| ||| |
|
|
| T |
2396 |
gcttctaccggatggtggttaagcgttggtttgttgcttcttcctccaagtgattacaccttgagttgtggtttcctcttgttggataagcatttgattg |
2297 |
T |
|
| Q |
167 |
atgactatgtttttagccgatgtgtttccagcatctttccttgtattttc |
216 |
Q |
| |
|
|| ||||||| || ||| |||| |||||| |||||||||||||| |||| |
|
|
| T |
2296 |
ttg-ctatgttcttggccaatgtatttccaacatctttccttgtactttc |
2248 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0263 (Bit Score: 61; Significance: 2e-26; HSPs: 1)
Name: scaffold0263
Description:
Target: scaffold0263; HSP #1
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 27 - 226
Target Start/End: Original strand, 22628 - 22820
Alignment:
| Q |
27 |
atggttaagcgttttgccttaattggctttgttgatgattgcttctacctgatggtggttaagcgttgcattgatgcttcttccttcaattggttcaacc |
126 |
Q |
| |
|
||||||||||||| || ||| ||||||||| |||| | ||||| ||| |||||||||||||||||| ||| ||||||||||| ||| |||| |
|
|
| T |
22628 |
atggttaagcgttgtgtcttttatggctttgtcgatgttggcttccaccggatggtggttaagcgttggtttgttgcttcttcctccaagtggtc----- |
22722 |
T |
|
| Q |
127 |
ttgagttgtggttgcttcttgttggataagcacttgtttgatgactatgtttttagccgatgtgtttccagcatctttccttgtattttcatttgcttga |
226 |
Q |
| |
|
|||||||||||| | |||||||||||||||| ||| ||| || ||||| | || |||||||| ||||| ||||||| |||||||||||||||||||||| |
|
|
| T |
22723 |
-tgagttgtggtttcctcttgttggataagcatttggttgttg-ctatgctcttggccgatgtatttccggcatcttaccttgtattttcatttgcttga |
22820 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0862 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0862
Description:
Target: scaffold0862; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 124 - 216
Target Start/End: Original strand, 49 - 141
Alignment:
| Q |
124 |
accttgagttgtggttgcttcttgttgga-taagcacttgtttgatgactatgtttttagccgatgtgtttccagcatctttccttgtattttc |
216 |
Q |
| |
|
|||||||||||||||| |||||||||| |||||| ||| ||| || ||||||| || ||| |||| ||||| |||||||||||||||||||| |
|
|
| T |
49 |
accttgagttgtggttttctcttgttggagtaagcatttgattgttg-ctatgttcttggccaatgtatttccggcatctttccttgtattttc |
141 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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