View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9917A_low_334 (Length: 225)
Name: NF9917A_low_334
Description: NF9917A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9917A_low_334 |
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Alignment Details
Target: chr4 (Bit Score: 172; Significance: 1e-92; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 172; E-Value: 1e-92
Query Start/End: Original strand, 23 - 206
Target Start/End: Original strand, 6412015 - 6412198
Alignment:
| Q |
23 |
agtaagaggggtttaactgtcacgatataagttgaagtgcactaaacaatctaaataataacttgagaatcacattccacgaaaatagaaataataatat |
122 |
Q |
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| T |
6412015 |
agtaagaggggcttaagtgtcacgatatgagttgaagtgcactaaacaatctaaataataacttgagaatcacattccacgaaaatagaaataataatat |
6412114 |
T |
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| Q |
123 |
gatcatgtgtgagcttaaaatatttagaaatagaaataaaattatttgtgttttccacacattccaaaccataagaacaaagaa |
206 |
Q |
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| T |
6412115 |
gatcatgtgtgagcttaaaatatttagaaatagaaataaaattatttgtgttttccacacattccaaaccataagaacaaagaa |
6412198 |
T |
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Target: chr6 (Bit Score: 37; Significance: 0.000000000005; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 52 - 140
Target Start/End: Original strand, 33231944 - 33232032
Alignment:
| Q |
52 |
agttgaagtgcactaaacaatctaaataataacttgagaatcacattccacgaaaatagaaataataatatgatcatgtgtgagcttaa |
140 |
Q |
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| T |
33231944 |
agttgaagtgcaccaaacaatctaaataaaaacatgagaatcaaattttacgagaatagaagtattattctgatcacgtgcgagcttaa |
33232032 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 47 - 142
Target Start/End: Original strand, 10738297 - 10738392
Alignment:
| Q |
47 |
atataagttgaagtgcactaaacaatctaaataataacttgagaatcacattccacgaaaatagaaataataatatgatcatgtgtgagcttaaaa |
142 |
Q |
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| T |
10738297 |
atataagttgaaatgctctaagtaatctgaataacagattgagaatcacattccacaagaagagcaataatatcatgatcatgtgcaagcttaaaa |
10738392 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 56 - 99
Target Start/End: Original strand, 17814266 - 17814309
Alignment:
| Q |
56 |
gaagtgcactaaacaatctaaataataacttgagaatcacattc |
99 |
Q |
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| T |
17814266 |
gaagtgcaccaaacaatctgaataacaacttgagaatcacattc |
17814309 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 66 - 118
Target Start/End: Complemental strand, 38003031 - 38002979
Alignment:
| Q |
66 |
aaacaatctaaataataacttgagaatcacattccacgaaaatagaaataata |
118 |
Q |
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| T |
38003031 |
aaacaatctaaataataacatgagaatcataatccacgataagagaagtaata |
38002979 |
T |
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