View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9917A_low_336 (Length: 224)
Name: NF9917A_low_336
Description: NF9917A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9917A_low_336 |
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Alignment Details
Target: chr5 (Bit Score: 180; Significance: 2e-97; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 180; E-Value: 2e-97
Query Start/End: Original strand, 6 - 205
Target Start/End: Original strand, 11860131 - 11860330
Alignment:
| Q |
6 |
tttggtgtttcagaaagcaaagaaactaaggaccattcttttgccatacaacattaacaaccctcagcttccgcatgaggtaaaggtgacaacatcaact |
105 |
Q |
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| T |
11860131 |
tttggtgtttcagaaagcaaagaaactaaggacctttcttttgccatacaacattaacaaccctcggcttccgtacgaggtaaaggtgacaacatcaact |
11860230 |
T |
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| Q |
106 |
tgtgaaaagatcttcgacaccttcaagtgctcgctacgcgtgttggatctacatgatttggggatcaagacggttccgagctctattgaggatgtgaagt |
205 |
Q |
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| T |
11860231 |
tgtgataagatcttcgacaccttcaagtgctcgctacgcgtgttggatctacatgatttggggatcaagacggttccgagctctattgaggatgtgaagt |
11860330 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 9 - 205
Target Start/End: Original strand, 11827999 - 11828195
Alignment:
| Q |
9 |
ggtgtttcagaaagcaaagaaactaaggaccattcttttgccatacaacattaacaaccctcagcttccgcatgaggtaaaggtgacaacatcaacttgt |
108 |
Q |
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| T |
11827999 |
ggtgtttcagacagcaaagaaactaaggaccattcttttgccatacaacattaacaaccctcgtcttccgcacgaggtaaagatgacaacgtcaacttgt |
11828098 |
T |
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| Q |
109 |
gaaaagatcttcgacaccttcaagtgctcgctacgcgtgttggatctacatgatttggggatcaagacggttccgagctctattgaggatgtgaagt |
205 |
Q |
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| T |
11828099 |
gataagatcttcgacaccttcaagtactcgctacgcgtgttggatctacatgacttggggatcaagacagttccaagctctattgaggatgtgaagt |
11828195 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 19 - 205
Target Start/End: Complemental strand, 11902410 - 11902227
Alignment:
| Q |
19 |
aaagcaaagaaactaaggaccattcttttgccatacaacattaacaaccctcagcttccgcatgaggtaaaggtgacaacatcaacttgtgaaaagatct |
118 |
Q |
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| T |
11902410 |
aaagcaaagaaactgagaaccattcttttgccgtacagcactaacaaccctcgccttccacacgaggtgaagatgacaacatcaacatgcgataagatct |
11902311 |
T |
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| Q |
119 |
tcgacaccttcaagtgctcgctacgcgtgttggatctacatgatttggggatcaagacggttccgagctctattgaggatgtgaagt |
205 |
Q |
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| T |
11902310 |
tcaacaccttcaag---tccctacgtgtgctggatctacatgacttggggattaagatggttccaacatctattgaggaggtgaagt |
11902227 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 10 - 205
Target Start/End: Original strand, 12038903 - 12039095
Alignment:
| Q |
10 |
gtgtttcagaaagcaaagaaactaaggaccattcttttgccatacaacattaacaaccctcagcttccgcatgaggtaaaggtgacaacatcaacttgtg |
109 |
Q |
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| T |
12038903 |
gtgtttgagaaagctaaaaaactgaggaccattcttttgccatacaacactgacaaccctcggcttcctgacgaggtacagatgacaacatcaacctgtg |
12039002 |
T |
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| Q |
110 |
aaaagatcttcgacaccttcaagtgctcgctacgcgtgttggatctacatgatttggggatcaagacggttccgagctctattgaggatgtgaagt |
205 |
Q |
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| T |
12039003 |
ataagatctttaacaccttcaa-agct--atgcgcgtgttagatatgcatgacttggggatcaagacgattccgagctctattgaagaggtgaagt |
12039095 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 21 - 197
Target Start/End: Original strand, 11731791 - 11731967
Alignment:
| Q |
21 |
agcaaagaaactaaggaccattcttttgccatacaa---cattaacaaccctcagcttccgcatgaggtaaaggtgacaacatcaacttgtgaaaagatc |
117 |
Q |
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| T |
11731791 |
agcaaagaaactgaggaccattttattgccatacaaaaacattaacaaccctcggcttccacacgaggtgaagatgacgacgccaacctgtgataagatc |
11731890 |
T |
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| Q |
118 |
ttcgacaccttcaagtgctcgctacgcgtgttggatctacatgatttggggatcaagacggttccgagctctattgagga |
197 |
Q |
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| T |
11731891 |
ttcaacaccttcaag---tccatgcacgtgttggatctacatgacttggggatcaagattgtaccaacctctattgagga |
11731967 |
T |
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