View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9917A_low_345 (Length: 220)
Name: NF9917A_low_345
Description: NF9917A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9917A_low_345 |
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Alignment Details
Target: chr4 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 20 - 64
Target Start/End: Original strand, 9913673 - 9913717
Alignment:
| Q |
20 |
atatgtatacatacatgactcaatttctctaatttagtgtctcac |
64 |
Q |
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| T |
9913673 |
atatgtatacatacatcactcaatttctctaatttagtgtctcac |
9913717 |
T |
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Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 155 - 201
Target Start/End: Original strand, 9913808 - 9913854
Alignment:
| Q |
155 |
gaggaacccaaaaaagtgaagaaagtcacataatgaataaaatatat |
201 |
Q |
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| T |
9913808 |
gaggaacccaaaaaagtgaagagagtcacatagtaaataaaatatat |
9913854 |
T |
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