View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9917A_low_346 (Length: 219)
Name: NF9917A_low_346
Description: NF9917A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9917A_low_346 |
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Alignment Details
Target: chr5 (Bit Score: 151; Significance: 5e-80; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 151; E-Value: 5e-80
Query Start/End: Original strand, 16 - 182
Target Start/End: Complemental strand, 35489920 - 35489754
Alignment:
| Q |
16 |
tggaagtatgattgctatcaaacttggagttagcggtgaaggctcgtttacaaaaaccgaagctgatcttctcttagtctttatatgtctatatgttgcg |
115 |
Q |
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| T |
35489920 |
tggaagtatgattgctatcaaacttggagttagcggtgaaggctcgtttacaaaaactgaagctgatcttctcttagtctttatatgtctatatgttgcg |
35489821 |
T |
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| Q |
116 |
gcatttgcatggtcttggggtgcgttgggatggttagttcctagtgaaatatgctctcttgatgtcc |
182 |
Q |
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| T |
35489820 |
gcatttgcatggtcttggggtgcgctgggatggttagttcccagtgaaatatgctctcttgaagtcc |
35489754 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 50; Significance: 9e-20; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 73 - 174
Target Start/End: Original strand, 14233080 - 14233181
Alignment:
| Q |
73 |
cgaagctgatcttctcttagtctttatatgtctatatgttgcggcatttgcatggtcttggggtgcgttgggatggttagttcctagtgaaatatgctct |
172 |
Q |
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| T |
14233080 |
cgaagccgaccttctcttgttctttatttgtgcatatgttgcggcatttgcatggtcttggggaccattgggttggttagtgcctagtgaaatatgcgct |
14233179 |
T |
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| Q |
173 |
ct |
174 |
Q |
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| T |
14233180 |
ct |
14233181 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 73 - 174
Target Start/End: Original strand, 14242754 - 14242855
Alignment:
| Q |
73 |
cgaagctgatcttctcttagtctttatatgtctatatgttgcggcatttgcatggtcttggggtgcgttgggatggttagttcctagtgaaatatgctct |
172 |
Q |
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| T |
14242754 |
cgaagccgaccttctcttgttctttatttgtgcatatgttgcggcatttgcatggtcttggggaccattgggttggttagtgcctagtgaagtatgcgct |
14242853 |
T |
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| Q |
173 |
ct |
174 |
Q |
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|| |
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| T |
14242854 |
ct |
14242855 |
T |
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