View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9917A_low_35 (Length: 393)
Name: NF9917A_low_35
Description: NF9917A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9917A_low_35 |
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Alignment Details
Target: chr4 (Bit Score: 314; Significance: 1e-177; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 314; E-Value: 1e-177
Query Start/End: Original strand, 1 - 338
Target Start/End: Complemental strand, 50422686 - 50422349
Alignment:
| Q |
1 |
tcgagtttagggaaggtataggctacatagaagatggtcaatgtgaagatgaagaagaagaagttggaagtgagattcaacggattggccatgcttgtgg |
100 |
Q |
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| T |
50422686 |
tcgagtttagggaaggtataggctacatagatgatggtcaatgtgaagatgaagaagaagaagttggaagtgagattcaacggattggccatgcttgtgg |
50422587 |
T |
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| Q |
101 |
ccttcttcctctttggctatgtctatttgtttatagttggtggcgttaattaaatatttaatagtagtgaagatgcttatgtgattattaatcgagattc |
200 |
Q |
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| T |
50422586 |
ccttctttctctttggctatgtctatttgtttatagttggtggcgttaattaaatatttaatagtagtgaagatgcttatgtgattattaatcgagattc |
50422487 |
T |
|
| Q |
201 |
ctaattacaaagcgacaagaggggctcagtgcgagggcaatttttctatattttaaaatatgtaattgaacagacccatataccaatgggataatagttt |
300 |
Q |
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| T |
50422486 |
ctaattacaaagtgacaagaggggctcagcgtgagggcaatttttatatattttaaaatatgtaattgaacagacccatataccaatgggataatagttt |
50422387 |
T |
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| Q |
301 |
ttgttgttgatagaaatatattgagattatgagaaaga |
338 |
Q |
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| T |
50422386 |
ttgttgttgatagaaatatattgagattatgagaaaga |
50422349 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 95
Target Start/End: Complemental strand, 50427859 - 50427765
Alignment:
| Q |
1 |
tcgagtttagggaaggtataggctacatagaagatggtcaatgtgaagatgaagaagaagaagttggaagtgagattcaacggattggccatgct |
95 |
Q |
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| T |
50427859 |
tcgagtttttggaaggtgtaggccacatagaggatgatcaatgtgaagatgaagaaaaatgagctggaagtgaggtttagtggattgaccatgct |
50427765 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 362 - 393
Target Start/End: Complemental strand, 50422353 - 50422322
Alignment:
| Q |
362 |
aaagagtctcacatcggacaatagatggttta |
393 |
Q |
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| T |
50422353 |
aaagagtctcacatcggacaatagatggttta |
50422322 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 358 - 390
Target Start/End: Original strand, 6312016 - 6312048
Alignment:
| Q |
358 |
tgttaaagagtctcacatcggacaatagatggt |
390 |
Q |
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| T |
6312016 |
tgttaaagagtctcacatcggacaaaagatggt |
6312048 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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