View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9917A_low_351 (Length: 218)

Name: NF9917A_low_351
Description: NF9917A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9917A_low_351
NF9917A_low_351
[»] chr1 (4 HSPs)
chr1 (73-197)||(35195298-35195422)
chr1 (82-178)||(33906690-33906787)
chr1 (81-178)||(32679993-32680091)
chr1 (82-178)||(23264379-23264476)
[»] chr5 (1 HSPs)
chr5 (82-178)||(593692-593789)
[»] chr4 (1 HSPs)
chr4 (102-151)||(54781820-54781869)
[»] chr3 (3 HSPs)
chr3 (102-167)||(27024099-27024164)
chr3 (102-151)||(13503288-13503337)
chr3 (102-167)||(17058842-17058907)
[»] chr2 (2 HSPs)
chr2 (82-167)||(44016914-44017000)
chr2 (102-151)||(22849492-22849541)
[»] scaffold0006 (1 HSPs)
scaffold0006 (102-151)||(203226-203275)
[»] chr7 (1 HSPs)
chr7 (102-151)||(21504983-21505032)
[»] chr6 (1 HSPs)
chr6 (102-151)||(24177678-24177727)


Alignment Details
Target: chr1 (Bit Score: 93; Significance: 2e-45; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 73 - 197
Target Start/End: Original strand, 35195298 - 35195422
Alignment:
Q  73 acgttacataatttgggatattattcaacattgtaagactctttttaggaaattttatgaaaactcatgtgttgagtttatgtggagacaagcaaccggg 172  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||  |||||||||||||| |||||||| ||| || |    
T  35195298 acgttacataatttgggatattattcaacattgtaagactttttttaggaaattttatgaaaactctggtgttgagtttatgcggagacaaacaaacgag 35195397  T
Q  173 gttgctaaaagtttatcctagacat 197  Q
    ||||||||||||||||| |||||||    
T  35195398 gttgctaaaagtttatcttagacat 35195422  T

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Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 82 - 178
Target Start/End: Complemental strand, 33906787 - 33906690
Alignment:
Q  82 aatttggga-tattattcaacattgtaagactctttttaggaaattttatgaaaactcatgtgttgagtttatgtggagacaagcaaccggggttgct 178  Q
    ||||||||| ||||||| ||||||||||  |||| | ||| || ||||||| ||||||| |||| |||||| || |||||||||||| || |||||||    
T  33906787 aatttgggaatattattgaacattgtaaatctctctgtagcaatttttatgtaaactcacgtgtcgagtttgtgcggagacaagcaaacgaggttgct 33906690  T

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Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 81 - 178
Target Start/End: Complemental strand, 32680091 - 32679993
Alignment:
Q  81 taatttggga-tattattcaacattgtaagactctttttaggaaattttatgaaaactcatgtgttgagtttatgtggagacaagcaaccggggttgct 178  Q
    |||||||||| ||||||| ||||||||||  |||| | ||| || ||||||| ||||||| || | |||||| || |||||||||||| || |||||||    
T  32680091 taatttgggaatattattgaacattgtaaatctctctgtagcaatttttatgtaaactcacgtttcgagtttgtgcggagacaagcaaacgaggttgct 32679993  T

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Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 82 - 178
Target Start/End: Complemental strand, 23264476 - 23264379
Alignment:
Q  82 aatttggga-tattattcaacattgtaagactctttttaggaaattttatgaaaactcatgtgttgagtttatgtggagacaagcaaccggggttgct 178  Q
    ||||||||| ||||||| ||||||||||  |||| | ||| ||  |||||| ||||||| |||| |||||| || |||||||||||| || |||||||    
T  23264476 aatttgggaatattattgaacattgtaaatctctctgtagcaatgtttatgtaaactcacgtgtcgagtttgtgcggagacaagcaaacgaggttgct 23264379  T

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Target: chr5 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 82 - 178
Target Start/End: Original strand, 593692 - 593789
Alignment:
Q  82 aatttggga-tattattcaacattgtaagactctttttaggaaattttatgaaaactcatgtgttgagtttatgtggagacaagcaaccggggttgct 178  Q
    ||||||||| ||||||| ||||||||||  |||| | ||| || ||||||| ||||||| |||| |||||| || |||||||||||| || |||||||    
T  593692 aatttgggaatattattgaacattgtaaatctctctgtagcaatttttatgtaaactcacgtgtcgagtttgtgcggagacaagcaaacgaggttgct 593789  T

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Target: chr4 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 102 - 151
Target Start/End: Original strand, 54781820 - 54781869
Alignment:
Q  102 attgtaagactctttttaggaaattttatgaaaactcatgtgttgagttt 151  Q
    ||||||| ||||| |||||  |||||||||||||||||||||||||||||    
T  54781820 attgtaaaactctctttagccaattttatgaaaactcatgtgttgagttt 54781869  T

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Target: chr3 (Bit Score: 34; Significance: 0.0000000003; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 102 - 167
Target Start/End: Complemental strand, 27024164 - 27024099
Alignment:
Q  102 attgtaagactctttttaggaaattttatgaaaactcatgtgttgagtttatgtggagacaagcaa 167  Q
    ||||||| ||||| ||||| || || |||||||||||| ||||||||||| || ||||||||||||    
T  27024164 attgtaaaactctctttagtaatttctatgaaaactcaagtgttgagtttgtgcggagacaagcaa 27024099  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 102 - 151
Target Start/End: Original strand, 13503288 - 13503337
Alignment:
Q  102 attgtaagactctttttaggaaattttatgaaaactcatgtgttgagttt 151  Q
    ||||||| ||||| |||||  |||||||||||||||| ||||||||||||    
T  13503288 attgtaaaactctctttagtcaattttatgaaaactcttgtgttgagttt 13503337  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 102 - 167
Target Start/End: Complemental strand, 17058907 - 17058842
Alignment:
Q  102 attgtaagactctttttaggaaattttatgaaaactcatgtgttgagtttatgtggagacaagcaa 167  Q
    ||||||| ||| | |||||| |||| |||||||||||  ||||||||||| || ||||||||||||    
T  17058907 attgtaaaactttatttaggcaattatatgaaaactctagtgttgagtttgtgcggagacaagcaa 17058842  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 82 - 167
Target Start/End: Original strand, 44016914 - 44017000
Alignment:
Q  82 aatttggga-tattattcaacattgtaagactctttttaggaaattttatgaaaactcatgtgttgagtttatgtggagacaagcaa 167  Q
    ||||||||| ||||||| ||||||||||  |||||| ||| || ||||||| ||||||| |||| ||| || || ||||||||||||    
T  44016914 aatttgggaatattattgaacattgtaaatctctttgtagcaacttttatgtaaactcacgtgtcgagattgtgcggagacaagcaa 44017000  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 102 - 151
Target Start/End: Original strand, 22849492 - 22849541
Alignment:
Q  102 attgtaagactctttttaggaaattttatgaaaactcatgtgttgagttt 151  Q
    ||||||| ||||| |||||  |||||||||||||||| ||||||||||||    
T  22849492 attgtaaaactctctttagtcaattttatgaaaactcttgtgttgagttt 22849541  T

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Target: scaffold0006 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 102 - 151
Target Start/End: Complemental strand, 203275 - 203226
Alignment:
Q  102 attgtaagactctttttaggaaattttatgaaaactcatgtgttgagttt 151  Q
    ||||||| ||||| |||||  |||||||||||||||| ||||||||||||    
T  203275 attgtaaaactctctttagtcaattttatgaaaactcttgtgttgagttt 203226  T

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Target: chr7 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 102 - 151
Target Start/End: Original strand, 21504983 - 21505032
Alignment:
Q  102 attgtaagactctttttaggaaattttatgaaaactcatgtgttgagttt 151  Q
    ||||||| ||||| |||||  |||||||||||||||| ||||||||||||    
T  21504983 attgtaaaactctctttagtcaattttatgaaaactcttgtgttgagttt 21505032  T

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Target: chr6 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 102 - 151
Target Start/End: Original strand, 24177678 - 24177727
Alignment:
Q  102 attgtaagactctttttaggaaattttatgaaaactcatgtgttgagttt 151  Q
    ||||||| ||||| |||||  |||||||||||||||| ||||||||||||    
T  24177678 attgtaaaactctctttagtcaattttatgaaaactcttgtgttgagttt 24177727  T

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