View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9917A_low_354 (Length: 216)
Name: NF9917A_low_354
Description: NF9917A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9917A_low_354 |
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Alignment Details
Target: chr2 (Bit Score: 158; Significance: 3e-84; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 158; E-Value: 3e-84
Query Start/End: Original strand, 11 - 208
Target Start/End: Original strand, 9915005 - 9915202
Alignment:
| Q |
11 |
tgagatgataaaattagcttaaagtgaagaactcattgccacgtcatcaaattggatgatcaaatcttaagatttgcaattttttgaagcgagaaaccaa |
110 |
Q |
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| T |
9915005 |
tgagatgataaaattagcttaaagtgaagaactcattgccacgtcatcaaattggatgatcaaaccctaagatttgcaattttttgaaatgagaaaccaa |
9915104 |
T |
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| Q |
111 |
aatattgcgtatttagaaagaagtaaccgaaatcttgatttttccaaaatatggataccaaaacaacatttaatttgagcctgaatgaaaaatcttgt |
208 |
Q |
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| T |
9915105 |
aatattgcgcatttagaaagaaggaaccaaaatctttatttttccaaaatatggataccaaaacaacatttaatttaagcctaaatgaaaaatcttgt |
9915202 |
T |
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