View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9917A_low_357 (Length: 215)
Name: NF9917A_low_357
Description: NF9917A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9917A_low_357 |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 199; Significance: 1e-108; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 1 - 215
Target Start/End: Complemental strand, 11592616 - 11592402
Alignment:
| Q |
1 |
agagagttgaatcattgatgagtttgttgaatttattgggattttcaagtggttatggaatgaatgtttggataacatttgtttctagttatgttttgtc |
100 |
Q |
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| T |
11592616 |
agagagttgaatcattgatgagtttgttgaatttgttgggattttcaagtggttatggaatgaatgtttggatcacatttgtttctagttatgttttgtc |
11592517 |
T |
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| Q |
101 |
tagggttatgccaagacaacaatttgctgtggtccagagtaagatttatcctgtttattttagggctatgggttattgtttattggttgctttgttgggt |
200 |
Q |
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| T |
11592516 |
tagggttatgccaagacaacaatttgctgtggtccagagtaagatttatcctgtttattttagggctatgggttattgtttattggttgctttgttgggt |
11592417 |
T |
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| Q |
201 |
catattcttggacat |
215 |
Q |
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| T |
11592416 |
catgtttttggacat |
11592402 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 1 - 215
Target Start/End: Original strand, 11645503 - 11645717
Alignment:
| Q |
1 |
agagagttgaatcattgatgagtttgttgaatttattgggattttcaagtggttatggaatgaatgtttggataacatttgtttctagttatgttttgtc |
100 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
11645503 |
agagagttgaatcattgatgagtttgttgaatttgttgggattttcaagtggttatggaatgaatgtttggatcacatttgtttctagttatgttttgtc |
11645602 |
T |
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| Q |
101 |
tagggttatgccaagacaacaatttgctgtggtccagagtaagatttatcctgtttattttagggctatgggttattgtttattggttgctttgttgggt |
200 |
Q |
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| T |
11645603 |
tagggttatgccaagacaacaatttgctgtggtccagagtaagatttatcctgtttattttagggctatgggttattgtttattggttgctttgttgggt |
11645702 |
T |
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| Q |
201 |
catattcttggacat |
215 |
Q |
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| T |
11645703 |
catgtttttggacat |
11645717 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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