View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9917A_low_363 (Length: 212)
Name: NF9917A_low_363
Description: NF9917A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9917A_low_363 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 138; Significance: 3e-72; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 13 - 212
Target Start/End: Complemental strand, 34676827 - 34676631
Alignment:
| Q |
13 |
gttgcagcagatagggacacaagttcagaaaaatcactgctcgttttcctgttagttgagttcataaaacacaccatcacnnnnnnnn-gccttacagaa |
111 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
34676827 |
gttgcagcagatagagacacaagttcagaaaaatcactgctcgttttcctgttagttgagttcataaaacacaccatcacaaaaaaaaagccttacagaa |
34676728 |
T |
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| Q |
112 |
tcactacactagtagcactaataacaagttgtttt-attatactaccatatcttttacacatgaaaagttcttacaaactctatatgagattgagacttg |
210 |
Q |
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|||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34676727 |
tcacta-----gtagcactaataacaagttgtttttattatactaccatatcttttacacatgaaaagttcttacaaactctatatgagattgagacttg |
34676633 |
T |
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