View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9917A_low_367 (Length: 211)
Name: NF9917A_low_367
Description: NF9917A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9917A_low_367 |
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Alignment Details
Target: chr4 (Bit Score: 80; Significance: 1e-37; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 17 - 128
Target Start/End: Original strand, 17167523 - 17167634
Alignment:
| Q |
17 |
aatatggactaaaactactaaaaagaaatcatttggcggacaaatagtaagattttgtttttataaggaaaaacaaaatttgactattttgtagtgactt |
116 |
Q |
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||||||||||||||||||| |||||||| ||||||| |||||||| |||||||||||||||||||| | |||| |||||| ||||||||||||||||||| |
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| T |
17167523 |
aatatggactaaaactacttaaaagaaaacatttggaggacaaattgtaagattttgtttttataacggaaaaaaaaattagactattttgtagtgactt |
17167622 |
T |
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| Q |
117 |
aaacatatcaaa |
128 |
Q |
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| T |
17167623 |
aaacatatcaaa |
17167634 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 17 - 128
Target Start/End: Original strand, 17173100 - 17173211
Alignment:
| Q |
17 |
aatatggactaaaactactaaaaagaaatcatttggcggacaaatagtaagattttgtttttataaggaaaaacaaaatttgactattttgtagtgactt |
116 |
Q |
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||||||||||||||||||| |||||||| ||||||| |||||||| |||||||||||||||||||| | |||| |||||| ||||||||||||||||||| |
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| T |
17173100 |
aatatggactaaaactacttaaaagaaaacatttggaggacaaattgtaagattttgtttttataacggaaaaaaaaattagactattttgtagtgactt |
17173199 |
T |
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| Q |
117 |
aaacatatcaaa |
128 |
Q |
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| T |
17173200 |
aaacatatcaaa |
17173211 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 17 - 79
Target Start/End: Complemental strand, 17251652 - 17251590
Alignment:
| Q |
17 |
aatatggactaaaactactaaaaagaaatcatttggcggacaaatagtaagattttgttttta |
79 |
Q |
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||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||| |
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| T |
17251652 |
aatatggactaaaactacttaaaagaaatcatttggaggacaaatagtaagattttgttttta |
17251590 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 71 - 128
Target Start/End: Complemental strand, 17251245 - 17251188
Alignment:
| Q |
71 |
ttgtttttataaggaaaaacaaaatttgactattttgtagtgacttaaacatatcaaa |
128 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17251245 |
ttgtttttataagcaaaaacaaaatttgactattttgtagtgacttaaacatatcaaa |
17251188 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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