View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9917A_low_378 (Length: 206)
Name: NF9917A_low_378
Description: NF9917A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9917A_low_378 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 122; Significance: 9e-63; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 122; E-Value: 9e-63
Query Start/End: Original strand, 17 - 187
Target Start/End: Original strand, 28730091 - 28730252
Alignment:
| Q |
17 |
acatcatacacaagataatctctcaagaaaatctgtaaagactaaatccacaaattgttttattaacgaactagttaagcaacatagagtatatatggat |
116 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28730091 |
acatcatacacaagataatctc--aagaaaatctgtaaagactaaatccaca-------ttattaacgaactagttaagcaacatagagtatatatggat |
28730181 |
T |
|
| Q |
117 |
aatagtgtgaactaactacaaattcagagttacaattcatgagacaaagaagtgcagcacaaactaaaaag |
187 |
Q |
| |
|
||||||||||| ||||||||||||||||||| || |||||||||||||||||||||||||||||||||||| |
|
|
| T |
28730182 |
aatagtgtgaattaactacaaattcagagtttcacttcatgagacaaagaagtgcagcacaaactaaaaag |
28730252 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 98; Significance: 2e-48; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 39 - 187
Target Start/End: Original strand, 38120529 - 38120675
Alignment:
| Q |
39 |
tcaagaaaatctgtaaagactaaatccacaaattgttttattaacgaactagttaagcaacatagagtatatatggataatagtgtgaactaactacaaa |
138 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| | |||||| ||||||||||||| ||| | ||||||||||||||| |||||||||| |
|
|
| T |
38120529 |
tcaagaaaatctgtaaagactaaatccacaaattgttttattgaagaactatttaagcaacatagtgtagtt--ggataatagtgtgaattaactacaaa |
38120626 |
T |
|
| Q |
139 |
ttcagagttacaattcatgagacaaagaagtgcagcacaaactaaaaag |
187 |
Q |
| |
|
|||| |||| || |||||||||||||||||||||||||||||||||||| |
|
|
| T |
38120627 |
ttcaaagtttcacttcatgagacaaagaagtgcagcacaaactaaaaag |
38120675 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University