View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9917A_low_379 (Length: 206)

Name: NF9917A_low_379
Description: NF9917A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9917A_low_379
NF9917A_low_379
[»] chr7 (3 HSPs)
chr7 (1-191)||(3437131-3437321)
chr7 (3-128)||(14798952-14799077)
chr7 (3-128)||(15245944-15246069)
[»] chr3 (3 HSPs)
chr3 (1-191)||(46240158-46240348)
chr3 (4-162)||(23541555-23541713)
chr3 (52-173)||(30038186-30038307)
[»] chr4 (2 HSPs)
chr4 (49-173)||(6869027-6869151)
chr4 (3-116)||(11318291-11318404)
[»] chr5 (1 HSPs)
chr5 (49-173)||(29878233-29878357)
[»] chr8 (1 HSPs)
chr8 (67-173)||(3921251-3921357)
[»] scaffold0140 (1 HSPs)
scaffold0140 (4-104)||(40053-40153)
[»] scaffold0121 (1 HSPs)
scaffold0121 (3-116)||(43494-43607)
[»] chr2 (1 HSPs)
chr2 (3-116)||(18131561-18131674)


Alignment Details
Target: chr7 (Bit Score: 183; Significance: 3e-99; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 183; E-Value: 3e-99
Query Start/End: Original strand, 1 - 191
Target Start/End: Complemental strand, 3437321 - 3437131
Alignment:
Q  1 ggatgtaggccatttattggggttgatggctgtcatctaaagacaaagtatgggggtcaactactcattgctgttggtagagacccaaatgaccagtact 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||    
T  3437321 ggatgtaggccatttattggggttgatggctgtcatctaaagacaaagtatggtggtcaactgctcattgctgttggtagagacccaaatgaccagtact 3437222  T
Q  101 ttcctcttgcatttggcattgttgaaactgagtgcagggcaagctggaagtggttcatggagttgctgttggatgacattgggaaagataa 191  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3437221 ttcctcttgcatttggcattgttgaaactgagtgcagggcaagctggaagtggttcatggagttgctgttggatgacattgggaaagataa 3437131  T

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Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 3 - 128
Target Start/End: Complemental strand, 14799077 - 14798952
Alignment:
Q  3 atgtaggccatttattggggttgatggctgtcatctaaagacaaagtatgggggtcaactactcattgctgttggtagagacccaaatgaccagtacttt 102  Q
    |||||| ||||||||||| |||||||| ||||| || |||||||| ||||| |||||| |  |  | ||||| || ||||| |||||||| || ||||||    
T  14799077 atgtagaccatttattggtgttgatgggtgtcacctgaagacaaaatatggaggtcaattgttggtggctgtaggaagagatccaaatgatcaatacttt 14798978  T
Q  103 cctcttgcatttggcattgttgaaac 128  Q
    ||| | || |||||  ||||||||||    
T  14798977 cctttagcttttggtgttgttgaaac 14798952  T

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Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 3 - 128
Target Start/End: Complemental strand, 15246069 - 15245944
Alignment:
Q  3 atgtaggccatttattggggttgatggctgtcatctaaagacaaagtatgggggtcaactactcattgctgttggtagagacccaaatgaccagtacttt 102  Q
    |||||| ||||||||||| |||||||| ||||| || |||||||| ||||| |||||| |  |  | ||||| || ||||| |||||||| || ||||||    
T  15246069 atgtagaccatttattggtgttgatgggtgtcacctgaagacaaaatatggaggtcaattgttggtggctgtaggaagagatccaaatgatcaatacttt 15245970  T
Q  103 cctcttgcatttggcattgttgaaac 128  Q
    ||| | || |||||  ||||||||||    
T  15245969 cctttagcttttggtgttgttgaaac 15245944  T

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Target: chr3 (Bit Score: 183; Significance: 3e-99; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 183; E-Value: 3e-99
Query Start/End: Original strand, 1 - 191
Target Start/End: Original strand, 46240158 - 46240348
Alignment:
Q  1 ggatgtaggccatttattggggttgatggctgtcatctaaagacaaagtatgggggtcaactactcattgctgttggtagagacccaaatgaccagtact 100  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  46240158 ggatgtaggccatttattggggttgatggttgtcatctaaagacaaagtatgggggtcaactgctcattgctgttggtagagacccaaatgaccagtact 46240257  T
Q  101 ttcctcttgcatttggcattgttgaaactgagtgcagggcaagctggaagtggttcatggagttgctgttggatgacattgggaaagataa 191  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46240258 ttcctcttgcatttggcattgttgaaactgagtgcagggcaagctggaagtggttcatggagttgctgttggatgacattgggaaagataa 46240348  T

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Target: chr3; HSP #2
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 4 - 162
Target Start/End: Original strand, 23541555 - 23541713
Alignment:
Q  4 tgtaggccatttattggggttgatggctgtcatctaaagacaaagtatgggggtcaactactcattgctgttggtagagacccaaatgaccagtactttc 103  Q
    ||||| |||||| ||||||| ||||| |||||| ||||||||||||||||||||||||| || || | ||||||||| |||||||||||||| || ||||    
T  23541555 tgtagaccatttgttggggtagatggatgtcatttaaagacaaagtatgggggtcaacttctaatagttgttggtagggacccaaatgaccaatattttc 23541654  T
Q  104 ctcttgcatttggcattgttgaaactgagtgcagggcaagctggaagtggttcatggag 162  Q
    |  | |||||||| || || |||||  |||| |||| ||||||||| ||||||||||||    
T  23541655 cattggcatttggaatagtagaaacaaagtgtagggaaagctggaaatggttcatggag 23541713  T

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Target: chr3; HSP #3
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 52 - 173
Target Start/End: Complemental strand, 30038307 - 30038186
Alignment:
Q  52 gggggtcaactactcattgctgttggtagagacccaaatgaccagtactttcctcttgcatttggcattgttgaaactgagtgcagggcaagctggaagt 151  Q
    |||||||||||  | |||||||| || |||||||||||||||||||| ||||| || || |||||  | |||||||||||||||| || ||  ||||| |    
T  30038307 gggggtcaactgttgattgctgtaggaagagacccaaatgaccagtattttccactagcttttggggtagttgaaactgagtgcaaggaaacttggaaat 30038208  T
Q  152 ggttcatggagttgctgttgga 173  Q
    |||||| | |||||||| ||||    
T  30038207 ggttcacgcagttgctgatgga 30038186  T

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Target: chr4 (Bit Score: 53; Significance: 1e-21; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 49 - 173
Target Start/End: Original strand, 6869027 - 6869151
Alignment:
Q  49 tatgggggtcaactactcattgctgttggtagagacccaaatgaccagtactttcctcttgcatttggcattgttgaaactgagtgcagggcaagctgga 148  Q
    |||||||| |||||  | |||||||| || |||||||||||||||||||||||||| || || |||||  | |||||||||||||||| || ||| ||||    
T  6869027 tatgggggccaactgttgattgctgtagggagagacccaaatgaccagtactttccactagcttttggggtagttgaaactgagtgcaaggaaagttgga 6869126  T
Q  149 agtggttcatggagttgctgttgga 173  Q
    | ||||||||| |||||||| ||||    
T  6869127 aatggttcatgcagttgctgatgga 6869151  T

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Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 3 - 116
Target Start/End: Complemental strand, 11318404 - 11318291
Alignment:
Q  3 atgtaggccatttattggggttgatggctgtcatctaaagacaaagtatgggggtcaactactcattgctgttggtagagacccaaatgaccagtacttt 102  Q
    |||||| || ||||| || |||||||| |||||||||||||| |  ||||| || ||||| || ||||| ||||  |||||||||||||| || || |||    
T  11318404 atgtagaccttttatcggtgttgatggttgtcatctaaagactagatatggaggacaacttcttattgcagttgcaagagacccaaatgatcaatatttt 11318305  T
Q  103 cctcttgcatttgg 116  Q
    ||| | ||||||||    
T  11318304 cctttagcatttgg 11318291  T

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Target: chr5 (Bit Score: 45; Significance: 8e-17; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 49 - 173
Target Start/End: Original strand, 29878233 - 29878357
Alignment:
Q  49 tatgggggtcaactactcattgctgttggtagagacccaaatgaccagtactttcctcttgcatttggcattgttgaaactgagtgcagggcaagctgga 148  Q
    |||||||| |||||  | |||||||| || |||||||||||||||||||| ||||| || || |||||  | |||||||||||||||| || ||| ||||    
T  29878233 tatggggggcaactgttgattgctgtaggaagagacccaaatgaccagtattttccactagcttttggggtagttgaaactgagtgcaaggaaagttgga 29878332  T
Q  149 agtggttcatggagttgctgttgga 173  Q
    | ||||||||  |||||||| ||||    
T  29878333 aatggttcatacagttgctgatgga 29878357  T

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Target: chr8 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 67 - 173
Target Start/End: Complemental strand, 3921357 - 3921251
Alignment:
Q  67 attgctgttggtagagacccaaatgaccagtactttcctcttgcatttggcattgttgaaactgagtgcagggcaagctggaagtggttcatggagttgc 166  Q
    |||||||| || |||||||||||||||||||| ||||| || || |||||  | |||||||||||||||| || ||| ||||| ||||||||  ||||||    
T  3921357 attgctgtaggaagagacccaaatgaccagtattttccactagcttttggggtagttgaaactgagtgcaaggaaagttggaaatggttcatacagttgc 3921258  T
Q  167 tgttgga 173  Q
    || ||||    
T  3921257 tgatgga 3921251  T

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Target: scaffold0140 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: scaffold0140
Description:

Target: scaffold0140; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 4 - 104
Target Start/End: Complemental strand, 40153 - 40053
Alignment:
Q  4 tgtaggccatttattggggttgatggctgtcatctaaagacaaagtatgggggtcaactactcattgctgttggtagagacccaaatgaccagtactttc 103  Q
    |||||||| ||||| || |||||||| |||||||| ||||| |||||||| |||   ||  | |||| ||||||||||||||||||||||||||| ||||    
T  40153 tgtaggccctttataggagttgatgggtgtcatcttaagaccaagtatggaggtactcttttaattgttgttggtagagacccaaatgaccagtattttc 40054  T
Q  104 c 104  Q
    |    
T  40053 c 40053  T

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Target: scaffold0121 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0121
Description:

Target: scaffold0121; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 3 - 116
Target Start/End: Original strand, 43494 - 43607
Alignment:
Q  3 atgtaggccatttattggggttgatggctgtcatctaaagacaaagtatgggggtcaactactcattgctgttggtagagacccaaatgaccagtacttt 102  Q
    |||||| || ||||| || |||||||| |||||||||||||| |  ||||| || ||||| || ||||| ||||| |||| ||||||||| || || |||    
T  43494 atgtagaccttttatcggtgttgatggttgtcatctaaagactagatatggaggacaacttcttattgcagttggaagaggcccaaatgatcaatatttt 43593  T
Q  103 cctcttgcatttgg 116  Q
    ||| | ||||||||    
T  43594 cctttagcatttgg 43607  T

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Target: chr2 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 3 - 116
Target Start/End: Complemental strand, 18131674 - 18131561
Alignment:
Q  3 atgtaggccatttattggggttgatggctgtcatctaaagacaaagtatgggggtcaactactcattgctgttggtagagacccaaatgaccagtacttt 102  Q
    |||||| || ||||| || |||||||| |||||||||||||| |  ||||| || ||||| || ||||| ||||| |||| ||||||||| || || |||    
T  18131674 atgtagaccttttatcggtgttgatggttgtcatctaaagactagatatggaggacaacttcttattgcagttggaagaggcccaaatgatcaatatttt 18131575  T
Q  103 cctcttgcatttgg 116  Q
    ||| | ||||||||    
T  18131574 cctttagcatttgg 18131561  T

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