View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9917A_low_382 (Length: 204)
Name: NF9917A_low_382
Description: NF9917A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9917A_low_382 |
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Alignment Details
Target: chr6 (Bit Score: 147; Significance: 1e-77; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 19 - 185
Target Start/End: Complemental strand, 29002342 - 29002176
Alignment:
| Q |
19 |
agctctatcattgaaagtttcagactttttcaactccctttgagcccaagcaacaggatcatcatcaccactaccaaaaccacaaccaccattgttacga |
118 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29002342 |
agctctatcattgaaagtttcagactttttcaactccctttcagcccaagcaacaggatcatcatcaccactaccaaaaccacaaccaccattgttacga |
29002243 |
T |
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| Q |
119 |
aatggttctgctttcacaatccttgcagtccaagtgtcgcttttctttagatatggcctctctgttt |
185 |
Q |
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|||||||| ||||||||||||||||||||||||||||| |||||||||||||||||| ||| ||||| |
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| T |
29002242 |
aatggttcggctttcacaatccttgcagtccaagtgtcacttttctttagatatggcttctttgttt |
29002176 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 104; E-Value: 5e-52
Query Start/End: Original strand, 19 - 185
Target Start/End: Complemental strand, 28962613 - 28962453
Alignment:
| Q |
19 |
agctctatcattgaaagtttcagactttttcaactccctttgagcccaagcaacaggatcatcatcaccactaccaaaaccacaaccaccattgttacga |
118 |
Q |
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||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| || || |||| |||||||||||| |
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| T |
28962613 |
agctctatcattgaatgtttcagactttttcaactccctttgagcccaagcaacaggatcatcatcaccaccacaaa------aaccgccattgttacga |
28962520 |
T |
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| Q |
119 |
aatggttctgctttcacaatccttgcagtccaagtgtcgcttttctttagatatggcctctctgttt |
185 |
Q |
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|||||||||||||||||||||||||||||||||||| | |||||||| |||| |||| ||| ||||| |
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| T |
28962519 |
aatggttctgctttcacaatccttgcagtccaagtgccacttttcttcagatgtggcttctttgttt |
28962453 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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