View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9917A_low_383 (Length: 203)

Name: NF9917A_low_383
Description: NF9917A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9917A_low_383
NF9917A_low_383
[»] chr1 (4 HSPs)
chr1 (34-179)||(47720704-47720849)
chr1 (34-179)||(47727696-47727841)
chr1 (34-175)||(47753589-47753729)
chr1 (34-100)||(47709491-47709557)


Alignment Details
Target: chr1 (Bit Score: 138; Significance: 2e-72; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 138; E-Value: 2e-72
Query Start/End: Original strand, 34 - 179
Target Start/End: Original strand, 47720704 - 47720849
Alignment:
Q  34 atgaagctcgacaaggtggacgttgcttgcacttacaatgtaacctgataaatttgagatccaagactcaagtaagcttccaattatagttttaataggg 133  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47720704 atgaagctcgacaaggtggacgttacttgcacttacaatgtaacctgataaatttgagatccaagactcaagtaagcttccaattatagttttaataggg 47720803  T
Q  134 ttgcttaaacaattgtcatcaacattaacccatttgggttgatctg 179  Q
    |||||||||||||||||||||||||||| |||||||||||||||||    
T  47720804 ttgcttaaacaattgtcatcaacattaatccatttgggttgatctg 47720849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 138; E-Value: 2e-72
Query Start/End: Original strand, 34 - 179
Target Start/End: Original strand, 47727696 - 47727841
Alignment:
Q  34 atgaagctcgacaaggtggacgttgcttgcacttacaatgtaacctgataaatttgagatccaagactcaagtaagcttccaattatagttttaataggg 133  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47727696 atgaagctcgacaaggtggacgttacttgcacttacaatgtaacctgataaatttgagatccaagactcaagtaagcttccaattatagttttaataggg 47727795  T
Q  134 ttgcttaaacaattgtcatcaacattaacccatttgggttgatctg 179  Q
    |||||||||||||||||||||||||||| |||||||||||||||||    
T  47727796 ttgcttaaacaattgtcatcaacattaatccatttgggttgatctg 47727841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 34 - 175
Target Start/End: Original strand, 47753589 - 47753729
Alignment:
Q  34 atgaagctcgacaaggtggacgttgcttgcacttacaatgtaacctgataaatttgagatccaagactcaagtaagcttccaattatagttttaataggg 133  Q
    |||||||||||||||||| || |  || ||||||  |||||||||||||||||||||||||||||||| |||||||| ||||| ||||| | ||||||||    
T  47753589 atgaagctcgacaaggtgaacata-ctggcacttgtaatgtaacctgataaatttgagatccaagactaaagtaagcctccaaatatagctgtaataggg 47753687  T
Q  134 ttgcttaaacaattgtcatcaacattaacccatttgggttga 175  Q
    |||||||||||||||||||| | |||||||||||| ||||||    
T  47753688 ttgcttaaacaattgtcatcgatattaacccatttaggttga 47753729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 34 - 100
Target Start/End: Original strand, 47709491 - 47709557
Alignment:
Q  34 atgaagctcgacaaggtggacgttgcttgcacttacaatgtaacctgataaatttgagatccaagac 100  Q
    ||||||||| |||||| |||| ||  |||||| | ||||||||  ||||||||||||||||||||||    
T  47709491 atgaagctcaacaaggaggactttaattgcacctgcaatgtaagttgataaatttgagatccaagac 47709557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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