View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9917A_low_386 (Length: 202)
Name: NF9917A_low_386
Description: NF9917A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9917A_low_386 |
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Alignment Details
Target: chr5 (Bit Score: 148; Significance: 3e-78; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 11 - 178
Target Start/End: Original strand, 1744176 - 1744343
Alignment:
| Q |
11 |
ctcgaagaatatccatcctcaaactcaaatttcaacaagcctgttgatttcgtgaaactgtctaaagatgatttgattcatagatccaaggtgtcggagc |
110 |
Q |
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| T |
1744176 |
ctcgaacaagatccatcctcaaactcaaatctcaacaagcctattgatttcgtgaaactgtctaaagatgatttgattcacagatccaaggtgtcggagc |
1744275 |
T |
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| Q |
111 |
acaaatcttttagcactatgcaagttggttcatcatcttgttttccaaataacaacaataaaggaaac |
178 |
Q |
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| T |
1744276 |
acaaatcttttagcactatgcaagttggttcatcatcttgttttccaaataacaacaataaaggaaac |
1744343 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 102; E-Value: 7e-51
Query Start/End: Original strand, 21 - 174
Target Start/End: Original strand, 1738843 - 1738996
Alignment:
| Q |
21 |
atccatcctcaaactcaaatttcaacaagcctgttgatttcgtgaaactgtctaaagatgatttgattcatagatccaaggtgtcggagcacaaatcttt |
120 |
Q |
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| T |
1738843 |
atccatcttcaaactctaatttcaacaagcctcttgattttgtgaaactatctaaagaggattcgattcacatgtccaaggtgtcagagcacaaaccttt |
1738942 |
T |
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| Q |
121 |
tagcactatgcaagttggttcatcatcttgttttccaaataacaacaataaagg |
174 |
Q |
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| T |
1738943 |
tagcactatgcaagttggttcatcatctcgttttccaaataacaacaataaagg |
1738996 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 132 - 168
Target Start/End: Original strand, 1759999 - 1760035
Alignment:
| Q |
132 |
aagttggttcatcatcttgttttccaaataacaacaa |
168 |
Q |
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| T |
1759999 |
aagttggttcatcatctggttttccaaataacaacaa |
1760035 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 12 - 88
Target Start/End: Original strand, 1724247 - 1724323
Alignment:
| Q |
12 |
tcgaagaatatccatcctcaaactcaaatttcaacaagcctgttgatttcgtgaaactgtctaaagatgatttgatt |
88 |
Q |
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| T |
1724247 |
tcgaacaagatccatcctcaaactcgaattccaacaagcctagtgattatgtgaagctatcaaaagatgattcgatt |
1724323 |
T |
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