View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9917A_low_388 (Length: 201)
Name: NF9917A_low_388
Description: NF9917A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9917A_low_388 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 125; Significance: 1e-64; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 125; E-Value: 1e-64
Query Start/End: Original strand, 20 - 173
Target Start/End: Original strand, 44689757 - 44689910
Alignment:
| Q |
20 |
aataatgcaggtcattttgtaccaaacaaaaaacatgattatacaagtatgctaannnnnnngagttagacatatacctctcacaagggatcagtttaat |
119 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44689757 |
aataatgcaggtcattttgtaccaaacaaaaaagatgattatacaagtatgctaatttttttgagttagacatatacctctcacaagggatcagtttaat |
44689856 |
T |
|
| Q |
120 |
caggtaaacttaacttatcatggtactaaaaagatgtttccccgacagtataat |
173 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
44689857 |
caggtaaacttaacttatcatggtactaaaaagatgtttccccgacagtgtaat |
44689910 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 31 - 173
Target Start/End: Original strand, 44680505 - 44680645
Alignment:
| Q |
31 |
tcattttgtaccaaacaaaaaacatgattatacaagtatgctaannnnnnngagttagacatatacctctcacaagggatcagtttaatcaggtaaactt |
130 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||| | |||||||||| ||| ||||||| |||| ||| ||||||||||||||||| |
|
|
| T |
44680505 |
tcattttgtaccaaacaaaaaacttgattatacaagtatgcttattttt--gagttagacacataactctcaccagggctcaatttaatcaggtaaactt |
44680602 |
T |
|
| Q |
131 |
aacttatcatggtactaaaaagatgtttccccgacagtataat |
173 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
44680603 |
aacttatcatggtactaaaaagatgtttccccgacagtgtaat |
44680645 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 30 - 168
Target Start/End: Complemental strand, 41983801 - 41983667
Alignment:
| Q |
30 |
gtcattttgtaccaaacaaaaaacatgattatacaagtatgctaannnnnnngagttagacatatacctctcacaagggatcagtttaatcaggtaaact |
129 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||| || ||||| ||| |||| ||||| |||| ||| |||||| || ||| | |
|
|
| T |
41983801 |
gtcattttgtaccaaacaaaaaacttgattatacaagtatgcaaattttta--agttaaacacatac--ctcacgagggctcaatttaattagataagca |
41983706 |
T |
|
| Q |
130 |
taacttatcatggtactaaaaagatgtttccccgacagt |
168 |
Q |
| |
|
||||||||| ||||||||||||||| ||||||| ||||| |
|
|
| T |
41983705 |
taacttatcgtggtactaaaaagatatttccccaacagt |
41983667 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University