View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9917A_low_40 (Length: 384)
Name: NF9917A_low_40
Description: NF9917A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9917A_low_40 |
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Alignment Details
Target: chr4 (Bit Score: 346; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 346; E-Value: 0
Query Start/End: Original strand, 8 - 372
Target Start/End: Complemental strand, 19124446 - 19124081
Alignment:
| Q |
8 |
ttggtgttggggtatgcctctacgctgaatgca-tacggacatgacctacaactcacggttctttaattttcgtatctaattatgtaagctgctgtcctt |
106 |
Q |
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| T |
19124446 |
ttggtgttggggtatgcctctacgctgaatgcaatacggacatgacctacaactcacggttctttaattttcgtatctaattatggcagctgctgtcctt |
19124347 |
T |
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| Q |
107 |
gaccagaccaaatagtatagtagtaattgaaaagaaagtgaaaaatctttctggacttcaatgttctgaacgtttgccaccaattgatatagatattttc |
206 |
Q |
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| T |
19124346 |
gaccagaccaaatagtatagtagtaattgaaaagaaagtgaaaaatctttctggacttcaatgttctgaacgtttgccaccaattgatatagatattttc |
19124247 |
T |
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| Q |
207 |
cactacggatgtttcctagagagaagaaatttcccccaccataatgatatatgagattaatgtaggagctagaatcctaatttcctttctgtcgtgacat |
306 |
Q |
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| T |
19124246 |
cactacggatgtttcctagagagaagaaatttcccccaccataatgatatatgagattaatgtaggagcaagaatcctaatttcctttctgtcgtgacat |
19124147 |
T |
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| Q |
307 |
tttttgttatcaaaatttatttctatttattgatgggaaattttatattaattcaattgtgactaa |
372 |
Q |
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| T |
19124146 |
tttttgttatcaaaatttatttctatttattgatgggaaattttatattaattcaattgtgactaa |
19124081 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 40 - 116
Target Start/End: Original strand, 19123428 - 19123505
Alignment:
| Q |
40 |
atacggacatgacctacaactcacggttctttaattttcgtatctaatta-tgtaagctgctgtccttgaccagacca |
116 |
Q |
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| T |
19123428 |
atacgggcatgacctacaacttacggttctttaattttcttatctaattactgtcagatgttgtccatgaccagacca |
19123505 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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