View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9917A_low_49 (Length: 371)
Name: NF9917A_low_49
Description: NF9917A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9917A_low_49 |
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| [»] chr5 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 293; Significance: 1e-164; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 36 - 371
Target Start/End: Complemental strand, 39956731 - 39956393
Alignment:
| Q |
36 |
gaataatcccagtagtgagattcagcttcatcacaatgaaagtgaacatcactgataacatgatactcactactattgccctaaccgtaacctgtttctg |
135 |
Q |
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| T |
39956731 |
gaataatcccagtagtgagattcagcttcatcacaatgaaagtgaacatcactgatagcatgatactcacgactattgccctagccgtaacctgtttctg |
39956632 |
T |
|
| Q |
136 |
ccacgaaggaacagattttccttcaaacccctgttcaacggaaatctcatcaagttgttcatcggaggtttcgacgtcacgtcgatgaggttctgaagcc |
235 |
Q |
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| T |
39956631 |
ccacgaaggaacagattttccttcaaaccctttttcaatggaaatctcatcaagttgttcatcggaggtttcgacgtcacgtcgatgaggttctgaagcc |
39956532 |
T |
|
| Q |
236 |
atgttacgatgaag---atgagtgaagagtgtggttgtgttgagtgtttggtttttgttttgcgattgttaatgaagtcgctttcgtgactactaggttg |
332 |
Q |
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| T |
39956531 |
atgttacgatgaagatgatgagtgaaaagtgtggttgtgttgagtgtttggtttttgttttgcgattgttaatgaagtcgctttcgtgactactaggttg |
39956432 |
T |
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| Q |
333 |
acatgctgtgtctatttatagtaaaggggtttggagagt |
371 |
Q |
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| T |
39956431 |
acatgctgtgtctatttatagtaaaggggtttcgagagt |
39956393 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 1 - 319
Target Start/End: Complemental strand, 39941085 - 39940766
Alignment:
| Q |
1 |
gaaccctaacaacccagccgaaacattcaaagagggaataatcccagtagtgagattcagcttcatcacaatgaaagtgaacatcactgataacatgata |
100 |
Q |
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| T |
39941085 |
gaaccctaacaacccagccgaaacattcaaagagggaataatcccagtagtgagattcagcttcatcacaatgaaagtgaacatcactgatagcatgata |
39940986 |
T |
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| Q |
101 |
ctcactactattgccctaaccgtaacctgtttctgccacgaaggaacagattttccttcaaacccctgttcaacggaaatctcatcaagttgttcatcgg |
200 |
Q |
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||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| | ||||| |||||||||||||||||||||||||| |
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| T |
39940985 |
ctcacgactattgccctaacagtaacctgtttctgccacgaaggaacagattttccttcaaaccctttttcaatggaaatctcatcaagttgttcatcgg |
39940886 |
T |
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| Q |
201 |
aggtttcgacgtcacgtcgatgaggttctgaagccatgttacgatgaagatgagtgaagagtgtggttgtgt-tgagtgtttggtttttgttttgcgatt |
299 |
Q |
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| T |
39940885 |
aggtttcgacgtcacgtcgatgaggttctggagccatgttacgatgaagatgagtgaagagtgtggttgtatcagagtgtttggttttgattttgcgatt |
39940786 |
T |
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| Q |
300 |
gttaatgaagtcgctttcgt |
319 |
Q |
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| T |
39940785 |
gttaatgaagtcgctttcgt |
39940766 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 97; Significance: 1e-47; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 2 - 198
Target Start/End: Original strand, 28750694 - 28750890
Alignment:
| Q |
2 |
aaccctaacaacccagccgaaacattcaaagagggaataatcccagtagtgagattcagcttcatcacaatgaaagtgaacatcactgataacatgatac |
101 |
Q |
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||||||||||| ||||| ||||||||||| || |||||||||||||| |||||||||| ||||||||| || || ||||||||||| || ||||||| || |
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| T |
28750694 |
aaccctaacaatccagcagaaacattcaacgaaggaataatcccagttgtgagattcaacttcatcacgataaacgtgaacatcaccgacaacatgagac |
28750793 |
T |
|
| Q |
102 |
tcactactattgccctaaccgtaacctgtttctgccacgaaggaacagattttccttcaaacccctgttcaacggaaatctcatcaagttgttcatc |
198 |
Q |
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| T |
28750794 |
tcgcaaatattgccctaacagtgacctgtttctgccacgtaggaacagatgttccttcaaaccctttttccacagaaatctcctcgagttgttcatc |
28750890 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 2 - 165
Target Start/End: Original strand, 28741849 - 28742012
Alignment:
| Q |
2 |
aaccctaacaacccagccgaaacattcaaagagggaataatcccagtagtgagattcagcttcatcacaatgaaagtgaacatcactgataacatgatac |
101 |
Q |
| |
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||||||||||||||||| |||||||||||||| |||||||||||||| ||||||||||| |||||||||||||| |||||||| || || ||||||| || |
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| T |
28741849 |
aaccctaacaacccagctgaaacattcaaagaaggaataatcccagttgtgagattcagtttcatcacaatgaacgtgaacattaccgacaacatgagac |
28741948 |
T |
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| Q |
102 |
tcactactattgccctaaccgtaacctgtttctgccacgaaggaacagattttccttcaaaccc |
165 |
Q |
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| T |
28741949 |
tcacgaataatgccctaacagtaacctgcttctgccacgtaggaacaagttttccttcaaaccc |
28742012 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 5 - 138
Target Start/End: Original strand, 7963656 - 7963790
Alignment:
| Q |
5 |
cctaacaacccagccgaaacattcaaagagggaataatcccagtagtgagattcagcttcatcacaatgaaagtgaacatcactga-taacatgatactc |
103 |
Q |
| |
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|||||||||||||| |||||||||| || ||||||||||||| ||||||||||| ||||||| ||||| |||||||||| || ||||||| |||| |
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| T |
7963656 |
cctaacaacccagcaaaaacattcaacgaatgaataatcccagttgtgagattcagattcatcatgatgaatgtgaacatcatcgaccaacatgagactc |
7963755 |
T |
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| Q |
104 |
actactattgccctaaccgtaacctgtttctgcca |
138 |
Q |
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|| | ||| | ||||||| |||| | ||||||||| |
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| T |
7963756 |
acgaatataggcctaaccataacatttttctgcca |
7963790 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 15 - 165
Target Start/End: Original strand, 7961143 - 7961293
Alignment:
| Q |
15 |
cagccgaaacattcaaagagggaataatcccagtagtgagattcagcttcatcacaatgaaagtgaacatcactgataacatgatactcactactattgc |
114 |
Q |
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|||| |||||||| || || |||||||| ||||| |||||||| ||||||||||| ||||| |||||||| || | || | || |||||| | ||| || |
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| T |
7961143 |
cagcagaaacatttaatgaaggaataattccagttgtgagattgagcttcatcacgatgaatgtgaacattaccgtcaaaacgagactcacgaatatagc |
7961242 |
T |
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| Q |
115 |
cctaaccgtaacctgtttctgccacgaaggaacagattttccttcaaaccc |
165 |
Q |
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| T |
7961243 |
cataaccgtgacattttggtgccacataggaactgattttccttcaaaccc |
7961293 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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