View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9917A_low_5 (Length: 535)
Name: NF9917A_low_5
Description: NF9917A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9917A_low_5 |
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Alignment Details
Target: chr5 (Bit Score: 415; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 415; E-Value: 0
Query Start/End: Original strand, 8 - 530
Target Start/End: Complemental strand, 7723367 - 7722857
Alignment:
| Q |
8 |
atggtgttccaagtgaaagagtacgatcaacagaagaagatgaagaattcggagtgaagcaatatgtttcaggttcatgatcataaggtgtagaggagga |
107 |
Q |
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| T |
7723367 |
atggtgttccaagtgaaagagtacaatcaacagaagaagatgaagaattaggagtgaagcaatatgtttcaggttcatgatcataaggtgtagaggagga |
7723268 |
T |
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| Q |
108 |
gaataacattgagaacgagttgttttgtccatgaaacataccacatgaacagtgtcccatcacgtgttgcccttgagatgaacgatgcatcattctttgt |
207 |
Q |
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| T |
7723267 |
gaataacattgagaatgagttgttttgtccatgaaacataccacatgaacagtgtcccatcacgtgttgcccttgagatgaacgatgcatcattctttgt |
7723168 |
T |
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| Q |
208 |
gaaaaagagtaatggaaaatgaatgatttgaagggnnnnnnnagagtagagtagagtagagaagagtgaattgttgtcttgtagtgtttgaagataataa |
307 |
Q |
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| T |
7723167 |
gaaaaagagtaatggaaaatgaatgatttgaaggg----------gttttttagagtagagaagagtgaattgttgtcttgtagtgtttgaagataataa |
7723078 |
T |
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| Q |
308 |
aatgtcgaaatactagtcagcacctgcagtccacgttgtcgtgaattgcaaatggagacatgtacatacaaatacaaaatatatatagtaaaggagataa |
407 |
Q |
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| T |
7723077 |
aatgtcgaaatactagtcagcacctgcagtccacgttgtcgtgaattgcaaatggagacatgtacatacaaatacaaaatatatatagtaaaggagataa |
7722978 |
T |
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| Q |
408 |
aattatagagcatannnnnnnnnnnnggacccaatgcaataaatgaaatgaagggtaagtcagggagtgagtgtgtaatgtaagcaagtgtttgagtttc |
507 |
Q |
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||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7722977 |
aattataaagcata--agagagagagggacccaatgcaataaatgaaatgaagggtaagtcagggagtgagtgtgtaatgtaagcaagtgtttgagtttc |
7722880 |
T |
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| Q |
508 |
tattatatctctgcagaattact |
530 |
Q |
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| T |
7722879 |
tattatatctctgcagaattact |
7722857 |
T |
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