View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9917A_low_50 (Length: 370)
Name: NF9917A_low_50
Description: NF9917A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9917A_low_50 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 164; Significance: 1e-87; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 50 - 294
Target Start/End: Complemental strand, 21789417 - 21789165
Alignment:
| Q |
50 |
tatgctctaggaaatagagttcctattgcatcaaagcgaattaaatccagaagctcttgaggtggtgtggcatgaaataagcactcttcatttgatgaag |
149 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||| || |||||||||||||||||| ||||||||||||||| |
|
|
| T |
21789417 |
tatgctctaggaaatagagttcctatagcatcaaagcgaattaaatccagaagctcatgagggggggtggcatgaaataagcacacttcatttgatgaag |
21789318 |
T |
|
| Q |
150 |
ctcccaacttagtcaagtagtccgcgcattggtttccttcgcagagacaatgatgaactgaaaaattatgcacagataagagatct--------ttgaat |
241 |
Q |
| |
|
|||||||||| | |||||| |||||||||||||||||||| | ||||||||||||||| ||||||||||||||||||||||||||| ||| || |
|
|
| T |
21789317 |
ctcccaacttggccaagtaatccgcgcattggtttccttcacggagacaatgatgaacggaaaaattatgcacagataagagatcttttatgtcttgtat |
21789218 |
T |
|
| Q |
242 |
taagacagcatacacatgatagtttgaaactcttcctgtaatgaggttgatgg |
294 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||| || ||||||| |
|
|
| T |
21789217 |
taagacagcgtacacatgatagtttgaaactcttcctgtaataagattgatgg |
21789165 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 50 - 294
Target Start/End: Complemental strand, 39464424 - 39464172
Alignment:
| Q |
50 |
tatgctctaggaaatagagttcctattgcatcaaagcgaattaaatccagaagctcttgaggtggtgtggcatgaaataagcactcttcatttgatgaag |
149 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||| |||||||||||||| |||||||| |||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
39464424 |
tatgctctaggaaatagagttcctatagcatcaaggcgaattaaatccataagctctttaggtggggtggcatgaaataagcactcttcatttgatgaag |
39464325 |
T |
|
| Q |
150 |
ctcccaacttagtcaagtagtccgcgcattggtttccttcgcagagacaatgatgaactgaaaaattatgcacagataagagatct--------ttgaat |
241 |
Q |
| |
|
|||||||||||| |||||| |||||||||||||||||||| | ||||||||||||||| ||||||||||||||||||||||||||| ||| || |
|
|
| T |
39464324 |
ctcccaacttagccaagtaatccgcgcattggtttccttcacggagacaatgatgaacggaaaaattatgcacagataagagatcttttatgtcttgtat |
39464225 |
T |
|
| Q |
242 |
taagacagcatacacatgatagtttgaaactcttcctgtaatgaggttgatgg |
294 |
Q |
| |
|
||||||||| |||||||||||||||||||||||| ||||||||| ||||||| |
|
|
| T |
39464224 |
taagacagcgtacacatgatagtttgaaactctttttgtaatgagattgatgg |
39464172 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 140; E-Value: 3e-73
Query Start/End: Original strand, 50 - 294
Target Start/End: Complemental strand, 37152620 - 37152368
Alignment:
| Q |
50 |
tatgctctaggaaatagagttcctattgcatcaaagcgaattaaatccagaagctcttgaggtggtgtggcatgaaataagcactcttcatttgatgaag |
149 |
Q |
| |
|
|||||||||||||| ||||||||||| |||||||||||||||||||||| |||||||||||||||||||| ||||||||||||| || ||| ||||||| |
|
|
| T |
37152620 |
tatgctctaggaaacagagttcctatggcatcaaagcgaattaaatccaagagctcttgaggtggtgtggcgtgaaataagcacttttaattagatgaag |
37152521 |
T |
|
| Q |
150 |
ctcccaacttagtcaagtagtccgcgcattggtttccttcgcagagacaatgatgaactgaaaaattatgcacagataagagatct--------ttgaat |
241 |
Q |
| |
|
|||| ||||| | ||| |||||||||||||||||||| || | ||||||||||||||||||||||||||||||||||||||| ||| ||| || |
|
|
| T |
37152520 |
ctcctaacttggccaaatagtccgcgcattggtttccctcacggagacaatgatgaactgaaaaattatgcacagataagaggtcttttatgtcttgtat |
37152421 |
T |
|
| Q |
242 |
taagacagcatacacatgatagtttgaaactcttcctgtaatgaggttgatgg |
294 |
Q |
| |
|
|||||| || ||||||||| || |||||||||||||||||||||||||||||| |
|
|
| T |
37152420 |
taagaccgcgtacacatgaaagcttgaaactcttcctgtaatgaggttgatgg |
37152368 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 50 - 283
Target Start/End: Original strand, 15462511 - 15462754
Alignment:
| Q |
50 |
tatgctctaggaaatagagttcctattgcatcaaagcgaattaaatccagaagctcttgaggtggtgtggcatgaaataagcactcttcatttgatgaag |
149 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||| ||||||||||| |||||||| ||||| || | |||||||| ||||||||||||||||||||||| |
|
|
| T |
15462511 |
tatgctctaggaaatagagttcctatagcatcaaaacgaattaaatcaagaagctcatgagggggggaggcatgaactaagcactcttcatttgatgaag |
15462610 |
T |
|
| Q |
150 |
ctcccaacttagtcaagtagtccgcgcattggtttccttcgcagagacaatgatgaactgaaaaattatgcacagataagagatct----------ttga |
239 |
Q |
| |
|
||||||||| |||||||||||||||||||| |||||||| | ||||||||||||||| |||||||||||| |||||||||||||| ||| |
|
|
| T |
15462611 |
atcccaacttggtcaagtagtccgcgcattgatttccttcacggagacaatgatgaacggaaaaattatgcgcagataagagatcttttttctatcttgt |
15462710 |
T |
|
| Q |
240 |
attaagacagcatacacatgatagtttgaaactcttcctgtaat |
283 |
Q |
| |
|
||||||||||| || |||||||||||||| ||||||||||||| |
|
|
| T |
15462711 |
attaagacagcgtaggcatgatagtttgaagctcttcctgtaat |
15462754 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 144; Significance: 1e-75; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 50 - 294
Target Start/End: Complemental strand, 18092946 - 18092694
Alignment:
| Q |
50 |
tatgctctaggaaatagagttcctattgcatcaaagcgaattaaatccagaagctcttgaggtggtgtggcatgaaataagcactcttcatttgatgaag |
149 |
Q |
| |
|
|||||||||||||| ||||||||||| |||||||||||||| ||||||| |||||| |||||||||||||| || ||||||||||||||||| ||||||| |
|
|
| T |
18092946 |
tatgctctaggaaacagagttcctatggcatcaaagcgaatcaaatccaaaagctcatgaggtggtgtggcgtggaataagcactcttcattagatgaag |
18092847 |
T |
|
| Q |
150 |
ctcccaacttagtcaagtagtccgcgcattggtttccttcgcagagacaatgatgaactgaaaaattatgcacagataagagatctttga--------at |
241 |
Q |
| |
|
|||| ||||| | ||| |||||||||||||||||||| || | ||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
18092846 |
ctcctaacttggccaaatagtccgcgcattggtttccctcacggagacaatgatgaactgaaaaattatgcacagataagagatctttgatgtcttgtat |
18092747 |
T |
|
| Q |
242 |
taagacagcatacacatgatagtttgaaactcttcctgtaatgaggttgatgg |
294 |
Q |
| |
|
|| ||| || ||||||||| || |||||||||||||||||||||||||||||| |
|
|
| T |
18092746 |
tatgaccgcgtacacatgaaagcttgaaactcttcctgtaatgaggttgatgg |
18092694 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 53 - 294
Target Start/End: Complemental strand, 31468997 - 31468748
Alignment:
| Q |
53 |
gctctaggaaatagagttcctattgcatcaaagcgaattaaatccagaagctcttgaggtggtgtggcatgaaataagcactcttcatttgatgaagctc |
152 |
Q |
| |
|
||||||||||| ||||||||||||||||| | ||| ||| | ||||| |||||||| | | |||||| | ||| ||||||||||| |||||||||| |
|
|
| T |
31468997 |
gctctaggaaacagagttcctattgcatccatctgaagcaaaacaagaagttcttgaggggcggaggcatgtactaaacactcttcattcgatgaagctc |
31468898 |
T |
|
| Q |
153 |
ccaacttagtcaagtagtccgcgcattggtttccttcgcagagacaatgatgaactgaaaaattatgcacagataagagatctttga--------attaa |
244 |
Q |
| |
|
|||| || | |||||| ||||| ||||| |||||||| | |||||||||||||||||| |||| || |||||| ||| || |||| ||||| |
|
|
| T |
31468897 |
ccaattttgccaagtaatccgcacattgatttccttcacggagacaatgatgaactgagtaattttgtgcagataggaggtccttgatatcttgtattaa |
31468798 |
T |
|
| Q |
245 |
gacagcatacacatgatagtttgaaactcttcctgtaatgaggttgatgg |
294 |
Q |
| |
|
|||||| || |||| ||||||||| || ||||||||||||| ||||||| |
|
|
| T |
31468797 |
gacagcgtaagcatggtagtttgaagctgttcctgtaatgagattgatgg |
31468748 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 105; Significance: 2e-52; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 53 - 294
Target Start/End: Complemental strand, 2961410 - 2961162
Alignment:
| Q |
53 |
gctctaggaaatagagttcctattgcatcaaagcgaattaaatccagaagctcttgaggtggtgtggcatgaaataagcactcttcatttgatgaagctc |
152 |
Q |
| |
|
||||||||||||||||||||||| |||||||| | |||||| | |||||||| ||||| || | |||||||| ||||||||||||||| |||||| ||| |
|
|
| T |
2961410 |
gctctaggaaatagagttcctatagcatcaaaacagattaaaacaagaagctcatgaggggg-gaggcatgaattaagcactcttcattcgatgaatctc |
2961312 |
T |
|
| Q |
153 |
ccaacttagtcaagtagtccgcgcattggtttccttcgcagagacaatgatgaactgaaaaattatgcacagataagagatc--------tttgaattaa |
244 |
Q |
| |
|
||||||| | |||||||||||| |||||||||||||| ||||||||||||||||| ||||| |||||| ||||||||||||| ||| ||||| |
|
|
| T |
2961311 |
ccaacttggccaagtagtccgcacattggtttccttcacagagacaatgatgaacggaaaagttatgcgcagataagagatcctttatatcttgtattaa |
2961212 |
T |
|
| Q |
245 |
gacagcatacacatgatagtttgaaactcttcctgtaatgaggttgatgg |
294 |
Q |
| |
|
||||||||| |||||||| ||||| ||||||||||||| || ||||||| |
|
|
| T |
2961211 |
gacagcataggcatgatagcttgaagctcttcctgtaataagattgatgg |
2961162 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 89; Significance: 8e-43; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 89; E-Value: 8e-43
Query Start/End: Original strand, 50 - 186
Target Start/End: Original strand, 42383340 - 42383476
Alignment:
| Q |
50 |
tatgctctaggaaatagagttcctattgcatcaaagcgaattaaatccagaagctcttgaggtggtgtggcatgaaataagcactcttcatttgatgaag |
149 |
Q |
| |
|
|||||||||||||| ||||||||||| |||||||||||||| ||||||| |||||| |||||||||||||| || ||||||||||||||||| ||||||| |
|
|
| T |
42383340 |
tatgctctaggaaacagagttcctatggcatcaaagcgaatcaaatccaaaagctcatgaggtggtgtggcgtggaataagcactcttcattagatgaag |
42383439 |
T |
|
| Q |
150 |
ctcccaacttagtcaagtagtccgcgcattggtttcc |
186 |
Q |
| |
|
|||| ||||| | ||| |||||||||||||||||||| |
|
|
| T |
42383440 |
ctcctaacttggccaaatagtccgcgcattggtttcc |
42383476 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 191 - 294
Target Start/End: Original strand, 42401260 - 42401371
Alignment:
| Q |
191 |
cagagacaatgatgaactgaaaaattatgcacagataagagatctttga--------attaagacagcatacacatgatagtttgaaactcttcctgtaa |
282 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||| || ||||||||| || |||||||||||||||||| |
|
|
| T |
42401260 |
cagagacaatgatgaactgaaaaattatgcacagataagagatctttgatgtcttgtattatgaccgcgtacacatgaaagcttgaaactcttcctgtaa |
42401359 |
T |
|
| Q |
283 |
tgaggttgatgg |
294 |
Q |
| |
|
|||||||||||| |
|
|
| T |
42401360 |
tgaggttgatgg |
42401371 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 55 - 219
Target Start/End: Complemental strand, 16324645 - 16324481
Alignment:
| Q |
55 |
tctaggaaatagagttcctattgcatcaaagcgaattaaatccagaagctcttgaggtggtgtggcatgaaataagcactcttcatttgatgaagctccc |
154 |
Q |
| |
|
||||||||| ||||||||||||||||| | |||| ||| | |||||||||||| | | |||||||| ||| || |||||||| ||||| |||||| |
|
|
| T |
16324645 |
tctaggaaacagagttcctattgcatccatttgaatcaaaacaagaagctcttgacaggcggaggcatgaactaaacattcttcattcgatgacgctccc |
16324546 |
T |
|
| Q |
155 |
aacttagtcaagtagtccgcgcattggtttccttcgcagagacaatgatgaactgaaaaattatg |
219 |
Q |
| |
|
|| || | |||||||||||||||||| || ||||| | || |||||||| ||||| |||||||| |
|
|
| T |
16324545 |
aatttcgccaagtagtccgcgcattgattcccttcccggaaacaatgatagactgagaaattatg |
16324481 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University