View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9917A_low_57 (Length: 356)
Name: NF9917A_low_57
Description: NF9917A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9917A_low_57 |
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Alignment Details
Target: chr5 (Bit Score: 287; Significance: 1e-161; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 16 - 318
Target Start/End: Complemental strand, 35489920 - 35489618
Alignment:
| Q |
16 |
tggaagtatgattgctatcaaacttggagttagcggtgaaggctcgtttacaaaaaccgaagctgatcttctcttagtctttatatgtctatatgttgcg |
115 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
35489920 |
tggaagtatgattgctatcaaacttggagttagcggtgaaggctcgtttacaaaaactgaagctgatcttctcttagtctttatatgtctatatgttgcg |
35489821 |
T |
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| Q |
116 |
gcatttgcatggtcttggggtgcgttgggatggttagttcctagtgaaatatgctctcttgaagtccgatctgcaggtcaagctaccaatgttgcagtga |
215 |
Q |
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| T |
35489820 |
gcatttgcatggtcttggggtgcgctgggatggttagttcccagtgaaatatgctctcttgaagtccgatctgcaggtcaagctaccaatgttgcagtga |
35489721 |
T |
|
| Q |
216 |
acatgttgttcacctttatcattgctcaagtttttcttaccatgctttgtcacttgaagtttggacttttcttcttctttgctggctttgtgctcatgat |
315 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
35489720 |
acatgttgttcacctttatcattgctcaagtttttcttaccatgctttgtcacttgaagtttggacttttcttcttctttgctggctttgtgctcatcat |
35489621 |
T |
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| Q |
316 |
gtc |
318 |
Q |
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||| |
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| T |
35489620 |
gtc |
35489618 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 118 - 280
Target Start/End: Complemental strand, 18233999 - 18233837
Alignment:
| Q |
118 |
atttgcatggtcttggggtgcgttgggatggttagttcctagtgaaatatgctctcttgaagtccgatctgcaggtcaagctaccaatgttgcagtgaac |
217 |
Q |
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| T |
18233999 |
atttgcatggtcttggggtcctctaggttggttggtgccaagtgaaatattcccactcgaagttcgttctgcggctcaaagtatcaatgtctctgttaac |
18233900 |
T |
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| Q |
218 |
atgttgttcacctttatcattgctcaagtttttcttaccatgctttgtcacttgaagtttgga |
280 |
Q |
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| T |
18233899 |
atgatttgcacctttatcattgctcaaattttcactacaatgctttgtcacatgaagtttgga |
18233837 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 115; Significance: 2e-58; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 73 - 307
Target Start/End: Original strand, 14233080 - 14233314
Alignment:
| Q |
73 |
cgaagctgatcttctcttagtctttatatgtctatatgttgcggcatttgcatggtcttggggtgcgttgggatggttagttcctagtgaaatatgctct |
172 |
Q |
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|||||| || |||||||| ||||||| ||| |||||||||||||||||||||||||||||| | ||||| |||||||| ||||||||||||||| || |
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| T |
14233080 |
cgaagccgaccttctcttgttctttatttgtgcatatgttgcggcatttgcatggtcttggggaccattgggttggttagtgcctagtgaaatatgcgct |
14233179 |
T |
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| Q |
173 |
cttgaagtccgatctgcaggtcaagctaccaatgttgcagtgaacatgttgttcacctttatcattgctcaagtttttcttaccatgctttgtcacttga |
272 |
Q |
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|| || || ||| | ||||||||||||| |||||||| ||||||||||| ||||| ||||| ||||||||||| || || ||||||||||||||||||| |
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| T |
14233180 |
ctagaggttcgaccagcaggtcaagctataaatgttgcggtgaacatgttcttcacatttatgattgctcaagtcttcctaaccatgctttgtcacttga |
14233279 |
T |
|
| Q |
273 |
agtttggacttttcttcttctttgctggctttgtg |
307 |
Q |
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||||||| |||||||| ||||||||||| |||||| |
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| T |
14233280 |
agtttggccttttctttttctttgctggttttgtg |
14233314 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 111; E-Value: 6e-56
Query Start/End: Original strand, 73 - 307
Target Start/End: Original strand, 14242754 - 14242988
Alignment:
| Q |
73 |
cgaagctgatcttctcttagtctttatatgtctatatgttgcggcatttgcatggtcttggggtgcgttgggatggttagttcctagtgaaatatgctct |
172 |
Q |
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|||||| || |||||||| ||||||| ||| |||||||||||||||||||||||||||||| | ||||| |||||||| ||||||||| ||||| || |
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| T |
14242754 |
cgaagccgaccttctcttgttctttatttgtgcatatgttgcggcatttgcatggtcttggggaccattgggttggttagtgcctagtgaagtatgcgct |
14242853 |
T |
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| Q |
173 |
cttgaagtccgatctgcaggtcaagctaccaatgttgcagtgaacatgttgttcacctttatcattgctcaagtttttcttaccatgctttgtcacttga |
272 |
Q |
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|| || || ||| | ||||||||||||| |||||||| ||||||||||| ||||| ||||| ||||||||||| || || ||||||||||||||||||| |
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| T |
14242854 |
ctagaggttcgaccagcaggtcaagctataaatgttgcggtgaacatgttcttcacatttatgattgctcaagtcttcctaaccatgctttgtcacttga |
14242953 |
T |
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| Q |
273 |
agtttggacttttcttcttctttgctggctttgtg |
307 |
Q |
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||||||| |||||||| ||||||||||| |||||| |
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| T |
14242954 |
agtttggccttttctttttctttgctggttttgtg |
14242988 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 74 - 274
Target Start/End: Original strand, 51580515 - 51580714
Alignment:
| Q |
74 |
gaagctgatcttctcttagtctttatatgtctatatgttgcggcatttgcatggtcttggggtgcgttgggatggttagttcctagtgaaatatgctctc |
173 |
Q |
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||||| || ||||| ||| |||||||| || |||||||||||||||||| |||||||||| || | || |||| | || |||||||| || |||| |
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| T |
51580515 |
gaagccgagcttcttttattctttataagtgcatatgttgcggcatttgctgggtcttggggcccgctaggttggtcgga-ccaagtgaaatttgttctc |
51580613 |
T |
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| Q |
174 |
ttgaagtccgatctgcaggtcaagctaccaatgttgcagtgaacatgttgttcacctttatcattgctcaagtttttcttaccatgctttgtcacttgaa |
273 |
Q |
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|||| || |||||||||||||||||| ||||||||| ||||||||||| ||||| ||| | ||||||||||||| || | |||||||||||||||||| |
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| T |
51580614 |
ttgaggtttgatctgcaggtcaagctatcaatgttgccgtgaacatgttattcacatttgttgttgctcaagttttcctcaacatgctttgtcacttgaa |
51580713 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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