View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9917A_low_59 (Length: 355)
Name: NF9917A_low_59
Description: NF9917A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9917A_low_59 |
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Alignment Details
Target: chr5 (Bit Score: 317; Significance: 1e-179; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 317; E-Value: 1e-179
Query Start/End: Original strand, 10 - 350
Target Start/End: Original strand, 29548021 - 29548361
Alignment:
| Q |
10 |
atgaaatttaactggcatgctccaccatttgttcattaaatgagtagctagcgctcaaagatgttattggtaagcctcaaagtgatcctctcaatcatgt |
109 |
Q |
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| T |
29548021 |
atgaaatttaactgtcatgctccaccatttgttcattaaatgagtagctagcgctcaaaaatgttattggtaagcctcaaagtaatcctctcaatcatgt |
29548120 |
T |
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| Q |
110 |
agattgtggctcttccaaagttgcactcctcatccatgtttgttcctggacctgcgaaaaatttaaaaattcaccccataaacccccttcttgctagaaa |
209 |
Q |
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|||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29548121 |
agattgtgactcttccaaagttgcactcctcatgcatgtttgttcctggacctgcgaaaaatttaaaaattcaccccataaacccccttcttgctagaaa |
29548220 |
T |
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| Q |
210 |
cttgcactcctatgacattgaaaataggtgaaaagaatcttctcccatttctttccacacacaaaggtgagtttcaacactgcgttctctcaaatgtaat |
309 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29548221 |
gttgcactcctatgacattgaaaataggtgaaaagaatcttctcccatttctttccacacacaaaggtgagtttcaacactgcgttctctcaaatgtaat |
29548320 |
T |
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| Q |
310 |
ctacgagttaacaacacattcatgcacacacggcaaataat |
350 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |
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| T |
29548321 |
ctacgagttaacaacacattcatgcacacacggcaaataat |
29548361 |
T |
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