View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9917A_low_60 (Length: 355)
Name: NF9917A_low_60
Description: NF9917A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9917A_low_60 |
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Alignment Details
Target: chr4 (Bit Score: 189; Significance: 1e-102; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 20 - 298
Target Start/End: Complemental strand, 32524959 - 32524677
Alignment:
| Q |
20 |
aatacgaagaagttttatttttggtaaatacaatcaatacaaagaagttggttatgccttaacgtgcattttttat--gagttagtgggtagttacttaa |
117 |
Q |
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| T |
32524959 |
aatacgaagaagttttatttttggtaactacaatcaatacaaagaagttggttatgccttaacgtgcattttttatatgagatagtgggtagttacttaa |
32524860 |
T |
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| Q |
118 |
ttttacnnnnnnnnnnnnnnnnnnnntcgttaaagggtctttaaatggaagttaacaaaa--tgaaagtagaaatggattaggagaatagttagttatta |
215 |
Q |
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| T |
32524859 |
ttttacaaaacaaaaaggagaaaaaatcgttaaagggtctttaaatggaagttaacaaaaaatgaaagtagaaatggattaggagaatagttagttatta |
32524760 |
T |
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| Q |
216 |
acgtacacacatccttcatatctattctacgacaatatattcctactatatttagcattgtttttcataatgaaaaattaact |
298 |
Q |
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| T |
32524759 |
acgtacacacatccttcatatctattctacgacaatatattcctactatatttagcattgtttttcataatggaaaattaact |
32524677 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 282 - 343
Target Start/End: Complemental strand, 32524666 - 32524605
Alignment:
| Q |
282 |
ataatgaaaaattaactaacacacgcaaagggtacttccgaaaaatcagcttcatgtctaac |
343 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||| |
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| T |
32524666 |
ataatgaaaaattaactaacacacgcaaagggtacttccgaaaaatcaggttcatatctaac |
32524605 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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