View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9917A_low_62 (Length: 352)
Name: NF9917A_low_62
Description: NF9917A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9917A_low_62 |
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Alignment Details
Target: chr1 (Bit Score: 305; Significance: 1e-171; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 305; E-Value: 1e-171
Query Start/End: Original strand, 24 - 344
Target Start/End: Original strand, 41341048 - 41341368
Alignment:
| Q |
24 |
agtaatcacttgtaggtcagttatttcctctataattactaatacatctgttactggtaatcacacacataaagcttccaataactctattacaaacttc |
123 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41341048 |
agtaatcacttgtaggtcagttatttcctctataattactaatacatctgttactggtaatcacacacataaagcttccaataactctattacaaacttc |
41341147 |
T |
|
| Q |
124 |
tcaactctcaaaagtttcaaggttgacattcaccattctaatgctccttccattatagaagtcttgcggtctccttcactacctgactggacaaaatgta |
223 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
41341148 |
tcaactctcaaaagtttcaaggttgacattcaccattctaatgctccttccattatagaagtcttgtggtctccttcactacctgactggacaaaatgta |
41341247 |
T |
|
| Q |
224 |
acacagatggagcatctgttggtatccctggtccctcctcttgtgggggtatttttagagataacgaaggtaactgtttaggggtgtttttccgaaccct |
323 |
Q |
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||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
41341248 |
acacaaatggagcatctgttggtatccctggtccctccttttgtgggggtatttttagagataacgaaggtaactgtttaggggtgttttttcgaaccct |
41341347 |
T |
|
| Q |
324 |
tacgatttctcaattcttatc |
344 |
Q |
| |
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||||||||||||||||||||| |
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| T |
41341348 |
tacgatttctcaattcttatc |
41341368 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 269; Significance: 1e-150; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 24 - 344
Target Start/End: Original strand, 20930273 - 20930593
Alignment:
| Q |
24 |
agtaatcacttgtaggtcagttatttcctctataattactaatacatctgttactggtaatcacacacataaagcttccaataactctattacaaacttc |
123 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||| |
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| T |
20930273 |
agtaatcacttgtaggtcagttatttcttctataattactaatacatctgttactggtaatcacacacacaaagcttccaataactctattacaggcttc |
20930372 |
T |
|
| Q |
124 |
tcaactctcaaaagtttcaaggttgacattcaccattctaatgctccttccattatagaagtcttgcggtctccttcactacctgactggacaaaatgta |
223 |
Q |
| |
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|||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||| ||||||||||| |||||||||||| |
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| T |
20930373 |
tcaattctcaaaagtttcaaggttgacattcaccattctaatgttccttccattatagaagtcttgtggtctcctccactacctgacaggacaaaatgta |
20930472 |
T |
|
| Q |
224 |
acacagatggagcatctgttggtatccctggtccctcctcttgtgggggtatttttagagataacgaaggtaactgtttaggggtgtttttccgaaccct |
323 |
Q |
| |
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|||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20930473 |
acacagatggagcatctgttggtaaccctggtccctcctcttgtgggggtagttttagagataacgaaggtaactgtttaggggtgtttttccgaaccct |
20930572 |
T |
|
| Q |
324 |
tacgatttctcaattcttatc |
344 |
Q |
| |
|
| |||||| |||||||||||| |
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|
| T |
20930573 |
tgcgatttttcaattcttatc |
20930593 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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