View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9917A_low_64 (Length: 350)
Name: NF9917A_low_64
Description: NF9917A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9917A_low_64 |
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| [»] scaffold0421 (1 HSPs) |
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Alignment Details
Target: scaffold0421 (Bit Score: 100; Significance: 2e-49; HSPs: 1)
Name: scaffold0421
Description:
Target: scaffold0421; HSP #1
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 20 - 146
Target Start/End: Complemental strand, 13397 - 13270
Alignment:
| Q |
20 |
tttttgtttgttggatctattcttttctt-actatcattatttacaaagttaaattttttaatatttccatgccatgtcattggtggtagaaaagggtgt |
118 |
Q |
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| T |
13397 |
ttttcgtttgttggatctattcttttctttattatcattctttacatagttaaattttttaatatttccatgccatgtcatcggtggtagaaaagggtgt |
13298 |
T |
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| Q |
119 |
accaaaagagtggtacatgaatcttttt |
146 |
Q |
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| T |
13297 |
accaaaagagtggtacatgaatcttttt |
13270 |
T |
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Target: chr2 (Bit Score: 100; Significance: 2e-49; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 149 - 248
Target Start/End: Original strand, 42211920 - 42212019
Alignment:
| Q |
149 |
actttttgtgacgtgcactttctctgtccttttctacggttttcattttctctcaaatctaaacccttcttctcacactttttgcaactgtcacgtgtgg |
248 |
Q |
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| T |
42211920 |
actttttgtgacgtgcactttctctgtccttttctacggttttcattttctctcaaatctaaacccttcttctcacactttttgcaactgtcacgtgtgg |
42212019 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 56; Significance: 4e-23; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 33 - 139
Target Start/End: Original strand, 47345444 - 47345551
Alignment:
| Q |
33 |
gatctattcttttcttact-atcattatttacaaagttaaattttttaatatttccatgccatgtcattggtggtagaaaagggtgtaccaaaagagtgg |
131 |
Q |
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|||||||||||||||| | |||||| |||||||||||||||| ||||||||||||||| |||||||| ||| || ||||||||||||||||||||| |
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| T |
47345444 |
gatctattcttttcttttttatcattctttacaaagttaaattgtttaatatttccatgtcatgtcatcagtgctataaaagggtgtaccaaaagagtaa |
47345543 |
T |
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| Q |
132 |
tacatgaa |
139 |
Q |
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| T |
47345544 |
tacatgaa |
47345551 |
T |
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