View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9917A_low_66 (Length: 349)
Name: NF9917A_low_66
Description: NF9917A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9917A_low_66 |
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Alignment Details
Target: chr5 (Bit Score: 252; Significance: 1e-140; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 7 - 343
Target Start/End: Complemental strand, 5188609 - 5188274
Alignment:
| Q |
7 |
tttcattcatcatgcaacacaacgacgcaagggtttgatgcagattccaaatcccttcctatacagtatatatgaattattttattcatcaaaatgacag |
106 |
Q |
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| T |
5188609 |
tttcattcatcatgcaacacaacgacgcaagggtttgatgcagattccaaatcccttc-tatacagtatatatgaattattttattcatcaaaatgacag |
5188511 |
T |
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| Q |
107 |
ctacgnnnnnnnnnggtacaaggaatattccgatgacataatattaattgacttggaatacttaattctcataaaaataagcatgctgaagtacgttgcc |
206 |
Q |
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| T |
5188510 |
ctacgaaaaaaaaaggtacaaggaatattccgatgacataatattaattgacttggaatacttaattctcataaaaataagcatgctgaagtacgttgcc |
5188411 |
T |
|
| Q |
207 |
ttgcatatgccatatagtatattcttttagcaaatagtagatgccaacaataatagtggag-nnnnnnnnnggaagaagaaagaaaaataatagtgaagt |
305 |
Q |
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| T |
5188410 |
ttgcatatgccatatagtatatccttttagcaaatagtagatgccaacaataatagtggagttttttttttggaagaagaaagaaaaataatagtgaagt |
5188311 |
T |
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| Q |
306 |
tatcgaatgggttggtctccctctaagatattgttgga |
343 |
Q |
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| T |
5188310 |
tatcgaat-ggttggtctccctctaagatatttttgga |
5188274 |
T |
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