View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9917A_low_68 (Length: 345)

Name: NF9917A_low_68
Description: NF9917A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9917A_low_68
NF9917A_low_68
[»] chr2 (26 HSPs)
chr2 (5-339)||(39215560-39215894)
chr2 (6-336)||(39161771-39162104)
chr2 (6-336)||(39207090-39207423)
chr2 (8-114)||(39370039-39370145)
chr2 (26-334)||(39388918-39389231)
chr2 (166-333)||(39192266-39192436)
chr2 (166-333)||(39197946-39198116)
chr2 (166-268)||(39222932-39223037)
chr2 (199-336)||(39370254-39370394)
chr2 (5-114)||(39192446-39192555)
chr2 (5-114)||(39198126-39198235)
chr2 (8-119)||(39468270-39468381)
chr2 (5-90)||(39137810-39137895)
chr2 (195-332)||(39381275-39381412)
chr2 (7-112)||(39473417-39473522)
chr2 (5-141)||(39414761-39414897)
chr2 (8-119)||(39397850-39397961)
chr2 (5-114)||(39222813-39222922)
chr2 (195-240)||(39421688-39421733)
chr2 (45-114)||(39459220-39459289)
chr2 (43-110)||(39381521-39381588)
chr2 (5-114)||(39421838-39421947)
chr2 (195-232)||(39468448-39468485)
chr2 (274-327)||(39223101-39223154)
chr2 (188-232)||(39459387-39459431)
chr2 (5-101)||(39494461-39494557)
[»] chr6 (2 HSPs)
chr6 (8-114)||(16113230-16113336)
chr6 (195-232)||(16113441-16113478)
[»] chr7 (2 HSPs)
chr7 (5-90)||(19807760-19807845)
chr7 (196-292)||(19807963-19808059)
[»] chr5 (2 HSPs)
chr5 (195-336)||(33561135-33561281)
chr5 (200-240)||(17059602-17059642)
[»] chr8 (1 HSPs)
chr8 (211-326)||(45342187-45342305)


Alignment Details
Target: chr2 (Bit Score: 323; Significance: 0; HSPs: 26)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 323; E-Value: 0
Query Start/End: Original strand, 5 - 339
Target Start/End: Original strand, 39215560 - 39215894
Alignment:
Q  5 gagaagcaatttgaaggaaggtggaaagaacttgagttaaaagagaataagttcaaagtacaggtaaaggagttcaagttaaaagagaagcagtttggag 104  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39215560 gagaagcaatttgaaggacggtggaaagaacttgagttaaaagagaataagttcaaagtacaggtaaaggagttcaagttaaaagagaagcagtttggag 39215659  T
Q  105 gacaagtcaaagaacctaagttaaagttgaaaaaattcgatttacgaccgacgaagcttgggtcaaggaaaaaatatattgaagaaacacaatcgggtaa 204  Q
    |||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39215660 gacaagtcaaggatcctaagttaaagttgaaaaaattcgatttacgaccgacgaagcttgggtcaaggaaaaaatatattgaagaaacacaatcgggtaa 39215759  T
Q  205 atgttcttattcatctagtttattgaaagagtttcaatacaacggttcctcttaatgatgatgacaatttttataacccgatctacatagttgtttaaaa 304  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39215760 atgttcttattcatctagtttattgaaagagtttcaatacaacggttcctcttaatgatgatgacaatttttataacccgatctacatagttgtttaaaa 39215859  T
Q  305 atatttttaatcatgttaatgttttatgtctttgt 339  Q
    |||||||||||||||||||||||||||||||||||    
T  39215860 atatttttaatcatgttaatgttttatgtctttgt 39215894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 6 - 336
Target Start/End: Original strand, 39161771 - 39162104
Alignment:
Q  6 agaagcaatttgaaggaaggtggaaagaacttgagttaaaagagaataagttcaaagtacaggtaaaggagttcaagttaaaagagaagcagtttggagg 105  Q
    |||| |||||||||||| ||||||| ||||| |||   |||||| ||||| |||||||| | |  |||||| |||| |||||||| ||||| |||| |||    
T  39161771 agaaacaatttgaaggacggtggaatgaactggagacgaaagagtataagctcaaagtaaatgagaaggagctcaacttaaaagaaaagcaatttgaagg 39161870  T
Q  106 acaagtcaaagaacctaagttaaagttgaaaaaattcgatttacgaccgacgaagcttgggtcaaggaaaaaatatattgaaga---aacacaatcgggt 202  Q
    ||||||||| || ||||||| |||| |||| ||||| |||  || ||  | | ||| || ||||||||||||||||||||| ||   || | |||| |||    
T  39161871 acaagtcaaggatcctaagtcaaagatgaataaatttgatggacaactaaaggagcctgagtcaaggaaaaaatatattgatgaggaaaaagaatccggt 39161970  T
Q  203 aaatgttcttattcatctagtttattgaaagagtttcaatacaacggttcctcttaatgatgatgacaatttttataacccgatctacatagttgtttaa 302  Q
    |||||||||| ||||||||| ||||||||||| ||| | || ||| |||||| ||||||||||||| | |||||  | || ||||||| || || |||||    
T  39161971 aaatgttcttcttcatctagattattgaaagaattttattataactgttccttttaatgatgatgatattttttgaatcctgatctacttaattttttaa 39162070  T
Q  303 aaatatttttaatcatgttaatgttttatgtctt 336  Q
    | |  |||||| ||||||||||||| ||||||||    
T  39162071 acacgtttttactcatgttaatgttgtatgtctt 39162104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 6 - 336
Target Start/End: Complemental strand, 39207423 - 39207090
Alignment:
Q  6 agaagcaatttgaaggaaggtggaaagaacttgagttaaaagagaataagttcaaagtacaggtaaaggagttcaagttaaaagagaagcagtttggagg 105  Q
    |||| |||||||||||| ||||||| ||||| |||   |||||| ||||| |||||||| | |  |||||| |||| |||||||| ||||| |||| |||    
T  39207423 agaaacaatttgaaggacggtggaatgaactggagacgaaagagtataagctcaaagtaaatgagaaggagctcaacttaaaagaaaagcaatttgaagg 39207324  T
Q  106 acaagtcaaagaacctaagttaaagttgaaaaaattcgatttacgaccgacgaagcttgggtcaaggaaaaaatatattgaaga---aacacaatcgggt 202  Q
    ||||||||| || ||||||| |||| |||| ||||| |||  || ||  | | ||| || ||||||||||||||||||||| ||   || | |||| |||    
T  39207323 acaagtcaaggatcctaagtcaaagatgaataaatttgatggacaactaaaggagcctgagtcaaggaaaaaatatattgatgaggaaaaagaatccggt 39207224  T
Q  203 aaatgttcttattcatctagtttattgaaagagtttcaatacaacggttcctcttaatgatgatgacaatttttataacccgatctacatagttgtttaa 302  Q
    |||||||||| ||||||||| ||||||||||| ||| | || ||| |||||| ||||||||||||| | |||||  | || ||||||| || || |||||    
T  39207223 aaatgttcttcttcatctagattattgaaagaattttattataactgttccttttaatgatgatgatattttttgaatcctgatctacttaattttttaa 39207124  T
Q  303 aaatatttttaatcatgttaatgttttatgtctt 336  Q
    | |  |||||| ||||||||||||| ||||||||    
T  39207123 acacgtttttactcatgttaatgttgtatgtctt 39207090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 8 - 114
Target Start/End: Original strand, 39370039 - 39370145
Alignment:
Q  8 aagcaatttgaaggaaggtggaaagaacttgagttaaaagagaataagttcaaagtacaggtaaaggagttcaagttaaaagagaagcagtttggaggac 107  Q
    ||||||||||||||| |||||||||||||||||||||||||||| ||||||| ||| ||||| ||||||||| | ||||||||||||||||||||| |||    
T  39370039 aagcaatttgaaggacggtggaaagaacttgagttaaaagagaacaagttcatagtgcaggtgaaggagttcgaattaaaagagaagcagtttggaagac 39370138  T
Q  108 aagtcaa 114  Q
    |||||||    
T  39370139 aagtcaa 39370145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 26 - 334
Target Start/End: Complemental strand, 39389231 - 39388918
Alignment:
Q  26 tggaaagaacttgagttaaaagagaataagttcaaagtacaggtaaaggagttcaagttaaaagagaagcagtttggaggacaagtcaaagaacctaagt 125  Q
    ||||| ||||| ||||| |||||| |||||||||||||| |||| |||||| |||| |||||||| |||||||||| ||| |||||||| || ||| |||    
T  39389231 tggaacgaactggagttgaaagagtataagttcaaagtaaaggtgaaggagctcaacttaaaagaaaagcagtttgaagggcaagtcaacgatcctgagt 39389132  T
Q  126 taaagttgaaaaaattcgatttacgaccgacgaagcttgggtcaaggaaaaaatatattgaag---aaacacaatcgggtaaatgttcttattcatctag 222  Q
     |||| |||| ||||| |||  || |   | | |||  | |||||||||||||||| |||| |   ||| | |||| |||||||||||||||||||| ||    
T  39389131 caaagctgaataaatttgatggacaaataaaggagcccgagtcaaggaaaaaatattttgatggggaaaaagaatccggtaaatgttcttattcatccag 39389032  T
Q  223 tttattgaaagagtttcaatacaacggttcctcttaatgatgatgaca--atttttataacccgatctacatagttgtttaaaaatatttttaatcatgt 320  Q
    |||||||||||| |||   |||||| |||||||||||||||||||| |   |||||||| |  ||||||| || ||   || |||  |||||||||||||    
T  39389031 tttattgaaagaatttttttacaactgttcctcttaatgatgatgatattttttttatagcttgatctacttaattccatagaaacgtttttaatcatgt 39388932  T
Q  321 taatgttttatgtc 334  Q
    ||||||| ||||||    
T  39388931 taatgttgtatgtc 39388918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 166 - 333
Target Start/End: Complemental strand, 39192436 - 39192266
Alignment:
Q  166 gtcaaggaaaaaatatattgaaga---aacacaatcgggtaaatgttcttattcatctagtttattgaaagagtttcaatacaacggttcctcttaatga 262  Q
    |||||||||||| |||||||| ||   || | |||| ||||||||| |||||||||||  |||||||| ||| ||||| | ||||  |||||||||||||    
T  39192436 gtcaaggaaaaagtatattgatgaggaaaaagaatcaggtaaatgtgcttattcatcttatttattgacagaatttcattgcaactattcctcttaatga 39192337  T
Q  263 tgatgacaatttttataacccgatctacatagttgtttaaaaatatttttaatcatgttaatgttttatgt 333  Q
    |||||| | ||||||||||  ||||||| || || |||||||| ||||||||||||||||||||| |||||    
T  39192336 tgatgatattttttataacatgatctacttaattctttaaaaacatttttaatcatgttaatgttctatgt 39192266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 166 - 333
Target Start/End: Complemental strand, 39198116 - 39197946
Alignment:
Q  166 gtcaaggaaaaaatatattgaaga---aacacaatcgggtaaatgttcttattcatctagtttattgaaagagtttcaatacaacggttcctcttaatga 262  Q
    |||||||||||| |||||||| ||   || | |||| ||||||||| |||||||||||  |||||||| ||| ||||| | ||||  |||||||||||||    
T  39198116 gtcaaggaaaaagtatattgatgaggaaaaagaatcaggtaaatgtgcttattcatcttatttattgacagaatttcattgcaactattcctcttaatga 39198017  T
Q  263 tgatgacaatttttataacccgatctacatagttgtttaaaaatatttttaatcatgttaatgttttatgt 333  Q
    |||||| | ||||||||||  ||||||| || || |||||||| ||||||||||||||||||||| |||||    
T  39198016 tgatgatattttttataacatgatctacttaattctttaaaaacatttttaatcatgttaatgttctatgt 39197946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 166 - 268
Target Start/End: Original strand, 39222932 - 39223037
Alignment:
Q  166 gtcaaggaaaaaatatattga---agaaacacaatcgggtaaatgttcttattcatctagtttattgaaagagtttcaatacaacggttcctcttaatga 262  Q
    |||||||||||||||||||||   ||||| | |||||||||||||||||||||||||| ||||||||||| | ||||  |||||| ||||||||||||||    
T  39222932 gtcaaggaaaaaatatattgatggagaaaaagaatcgggtaaatgttcttattcatcttgtttattgaaaaaatttctttacaactgttcctcttaatga 39223031  T
Q  263 tgatga 268  Q
    ||||||    
T  39223032 tgatga 39223037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 199 - 336
Target Start/End: Original strand, 39370254 - 39370394
Alignment:
Q  199 gggtaaatgttcttattcatctagtttattgaaagagtttcaatacaacggttcctctta---atgatgatgacaatttttataacccgatctacatagt 295  Q
    ||||||||||||||||||||||||||||||||   | ||||| || ||  ||||| ||||   |||||||||| | |||||||||||||||||| |||||    
T  39370254 gggtaaatgttcttattcatctagtttattgatttaatttcattataattgttccacttaatgatgatgatgatattttttataacccgatctatatagt 39370353  T
Q  296 tgtttaaaaatatttttaatcatgttaatgttttatgtctt 336  Q
    | | |||||| ||| ||||||||||||||||| ||||||||    
T  39370354 tctataaaaacattcttaatcatgttaatgttgtatgtctt 39370394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 5 - 114
Target Start/End: Complemental strand, 39192555 - 39192446
Alignment:
Q  5 gagaagcaatttgaaggaaggtggaaagaacttgagttaaaagagaataagttcaaagtacaggtaaaggagttcaagttaaaagagaagcagtttggag 104  Q
    ||||||||||| |||||| | ||||  |||||||||| |||||||||||||||||||| | |||| |||||| |||| |||||||| |||||||||| ||    
T  39192555 gagaagcaattagaaggacgatggagtgaacttgagtcaaaagagaataagttcaaagcaaaggtgaaggagctcaacttaaaagaaaagcagtttgaag 39192456  T
Q  105 gacaagtcaa 114  Q
    ||| ||||||    
T  39192455 gactagtcaa 39192446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 5 - 114
Target Start/End: Complemental strand, 39198235 - 39198126
Alignment:
Q  5 gagaagcaatttgaaggaaggtggaaagaacttgagttaaaagagaataagttcaaagtacaggtaaaggagttcaagttaaaagagaagcagtttggag 104  Q
    ||||||||||| |||||| | ||||  |||||||||| |||||||||||||||||||| | |||| |||||| |||| |||||||| |||||||||| ||    
T  39198235 gagaagcaattagaaggacgatggagtgaacttgagtcaaaagagaataagttcaaagcaaaggtgaaggagctcaacttaaaagaaaagcagtttgaag 39198136  T
Q  105 gacaagtcaa 114  Q
    ||| ||||||    
T  39198135 gactagtcaa 39198126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 8 - 119
Target Start/End: Original strand, 39468270 - 39468381
Alignment:
Q  8 aagcaatttgaaggaaggtggaaagaacttgagttaaaagagaataagttcaaagtacaggtaaaggagttcaagttaaaagagaagcagtttggaggac 107  Q
    ||||||||||| | | |||| |||||| |  ||| ||||||||||  |||||||||| |||| ||||||||||||||||||||||||||| ||| |||||    
T  39468270 aagcaatttgatgaacggtgtaaagaattgaagtcaaaagagaatcggttcaaagtaaaggtgaaggagttcaagttaaaagagaagcagattgaaggac 39468369  T
Q  108 aagtcaaagaac 119  Q
    ||||||| ||||    
T  39468370 aagtcaaggaac 39468381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 5 - 90
Target Start/End: Original strand, 39137810 - 39137895
Alignment:
Q  5 gagaagcaatttgaaggaaggtggaaagaacttgagttaaaagagaataagttcaaagtacaggtaaaggagttcaagttaaaaga 90  Q
    ||||||||| |||||| | ||||||||||||| |||| ||||||||||||||||||||||| ||| || ||| |||||||||||||    
T  39137810 gagaagcaaattgaagaacggtggaaagaactcgagtcaaaagagaataagttcaaagtactggtcaaagagctcaagttaaaaga 39137895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 195 - 332
Target Start/End: Complemental strand, 39381412 - 39381275
Alignment:
Q  195 aatcgggtaaatgttcttattcatctagtttattgaaagagtttcaatacaacggttcctcttaatgatgatgacaatttttataacccgatctacatag 294  Q
    |||| ||||||||||||||||||| ||||||| ||||||| ||||| | ||   ||| || ||||||||| ||| | ||||  ||||  ||||||||||     
T  39381412 aatctggtaaatgttcttattcatatagtttactgaaagaatttcatttcagttgtttcttttaatgatgttgatacttttattaacttgatctacataa 39381313  T
Q  295 ttgtttaaaaatatttttaatcatgttaatgttttatg 332  Q
    ||  |||||||||||||||||| |||||||||| ||||    
T  39381312 ttcattaaaaatatttttaatcgtgttaatgttgtatg 39381275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 7 - 112
Target Start/End: Complemental strand, 39473522 - 39473417
Alignment:
Q  7 gaagcaatttgaaggaaggtggaaagaacttgagttaaaagagaataagttcaaagtacaggtaaaggagttcaagttaaaagagaagcagtttggagga 106  Q
    |||||||||||||| | | ||||||||||| |||| |||||||||||||||||||||||  || |||    |||||||||||||||||||| ||| ||||    
T  39473522 gaagcaatttgaagaacgatggaaagaactcgagtcaaaagagaataagttcaaagtactagtgaagtcactcaagttaaaagagaagcaggttgaagga 39473423  T
Q  107 caagtc 112  Q
     |||||    
T  39473422 gaagtc 39473417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 5 - 141
Target Start/End: Complemental strand, 39414897 - 39414761
Alignment:
Q  5 gagaagcaatttgaaggaaggtggaaagaacttgagttaaaagagaataagttcaaagtacaggtaaaggagttcaagttaaaagagaagcagtttggag 104  Q
    |||||||||||||||| | | |||||||||||  ||  ||| ||||||||||||||| ||| ||| || ||| |||||||||| ||||| ||||||| ||    
T  39414897 gagaagcaatttgaagaacgatggaaagaactcaagacaaatgagaataagttcaaactactggtcaaagagctcaagttaaatgagaaacagtttgaag 39414798  T
Q  105 gacaagtcaaagaacctaagttaaagttgaaaaaatt 141  Q
    ||||||| || || ||| ||| |||| || |||||||    
T  39414797 gacaagttaaggatcctgagtcaaagctggaaaaatt 39414761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 8 - 119
Target Start/End: Complemental strand, 39397961 - 39397850
Alignment:
Q  8 aagcaatttgaaggaaggtggaaagaacttgagttaaaagagaataagttcaaagtacaggtaaaggagttcaagttaaaagagaagcagtttggaggac 107  Q
    |||||| |||||| | |||||||| ||||||||| |||||||||| ||||||||||| ||||  ||||| |  ||||||||||||||||| ||| ||| |    
T  39397961 aagcaaattgaagaacggtggaaaaaacttgagtcaaaagagaatcagttcaaagtaaaggtgcaggagcttgagttaaaagagaagcaggttgcaggtc 39397862  T
Q  108 aagtcaaagaac 119  Q
     |||||| ||||    
T  39397861 gagtcaaggaac 39397850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 5 - 114
Target Start/End: Original strand, 39222813 - 39222922
Alignment:
Q  5 gagaagcaatttgaaggaaggtggaaagaacttgagttaaaagagaataagttcaaagtacaggtaaaggagttcaagttaaaagagaagcagtttggag 104  Q
    |||||||||||||||| | | |||||  ||||||||| | |||||||||||||||||| | |||| |||||| |||| || ||||| |||  ||||| ||    
T  39222813 gagaagcaatttgaagaacgatggaataaacttgagtcagaagagaataagttcaaagcaaaggtgaaggagctcaacttcaaagaaaagtggtttgaag 39222912  T
Q  105 gacaagtcaa 114  Q
    ||||||||||    
T  39222913 gacaagtcaa 39222922  T

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Target: chr2; HSP #19
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 195 - 240
Target Start/End: Complemental strand, 39421733 - 39421688
Alignment:
Q  195 aatcgggtaaatgttcttattcatctagtttattgaaagagtttca 240  Q
    |||| |||||||||||||||||||||| ||||||||||||||||||    
T  39421733 aatctggtaaatgttcttattcatctaatttattgaaagagtttca 39421688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 45 - 114
Target Start/End: Original strand, 39459220 - 39459289
Alignment:
Q  45 aagagaataagttcaaagtacaggtaaaggagttcaagttaaaagagaagcagtttggaggacaagtcaa 114  Q
    |||||||||||||||||||||  || || ||| ||||||||||||| ||||| |||| ||||||||||||    
T  39459220 aagagaataagttcaaagtactagtgaaagagctcaagttaaaagacaagcaatttgaaggacaagtcaa 39459289  T

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Target: chr2; HSP #21
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 43 - 110
Target Start/End: Complemental strand, 39381588 - 39381521
Alignment:
Q  43 aaaagagaataagttcaaagtacaggtaaaggagttcaagttaaaagagaagcagtttggaggacaag 110  Q
    |||||||||| ||||||||||| || | || ||| |||||||||||||||||||||||| | ||||||    
T  39381588 aaaagagaatgagttcaaagtaaagatgaatgagctcaagttaaaagagaagcagtttgaaagacaag 39381521  T

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Target: chr2; HSP #22
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 5 - 114
Target Start/End: Complemental strand, 39421947 - 39421838
Alignment:
Q  5 gagaagcaatttgaaggaaggtggaaagaacttgagttaaaagagaataagttcaaagtacaggtaaaggagttcaagttaaaagagaagcagtttggag 104  Q
    |||||| ||||||||| |   |||||||||||  ||| |||||||||||||||||||||||  || || ||| |||| |||||||| ||||  |||||||    
T  39421947 gagaagaaatttgaagaacaatggaaagaactcaagtcaaaagagaataagttcaaagtactagtgaaagagctcaaattaaaagacaagcgatttggag 39421848  T
Q  105 gacaagtcaa 114  Q
     || ||||||    
T  39421847 cactagtcaa 39421838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 195 - 232
Target Start/End: Original strand, 39468448 - 39468485
Alignment:
Q  195 aatcgggtaaatgttcttattcatctagtttattgaaa 232  Q
    |||| |||||||||||||||||||||||||||||||||    
T  39468448 aatctggtaaatgttcttattcatctagtttattgaaa 39468485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 274 - 327
Target Start/End: Original strand, 39223101 - 39223154
Alignment:
Q  274 tttataacccgatctacatagttgtttaaaaatatttttaatcatgttaatgtt 327  Q
    |||| |||| ||||||| || || ||||| ||||||||||||||||||||||||    
T  39223101 tttacaacctgatctacttaattctttaagaatatttttaatcatgttaatgtt 39223154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 188 - 232
Target Start/End: Original strand, 39459387 - 39459431
Alignment:
Q  188 gaaacacaatcgggtaaatgttcttattcatctagtttattgaaa 232  Q
    |||||| |||||||||| ||||||||||||| ||| |||||||||    
T  39459387 gaaacagaatcgggtaagtgttcttattcatttagcttattgaaa 39459431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 5 - 101
Target Start/End: Complemental strand, 39494557 - 39494461
Alignment:
Q  5 gagaagcaatttgaaggaaggtggaaagaacttgagttaaaagagaataagttcaaagtacaggtaaaggagttcaagttaaaagagaagcagtttg 101  Q
    ||||| |||||||||||| |  ||||||| |  |||| |||||| || |||||||||| ||| || |||||| | |||  |||||||||||||||||    
T  39494557 gagaaacaatttgaaggacgagggaaagagccagagtcaaaagacaagaagttcaaagcacacgtgaaggagctgaagccaaaagagaagcagtttg 39494461  T

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Target: chr6 (Bit Score: 55; Significance: 1e-22; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 8 - 114
Target Start/End: Original strand, 16113230 - 16113336
Alignment:
Q  8 aagcaatttgaaggaaggtggaaagaacttgagttaaaagagaataagttcaaagtacaggtaaaggagttcaagttaaaagagaagcagtttggaggac 107  Q
    ||||||||||||| | ||||||||||||| || | |||||||||| ||||||||||| |||  |||||| |||||||||||||||||||| ||| || ||    
T  16113230 aagcaatttgaagaacggtggaaagaactcgaatcaaaagagaatcagttcaaagtaaaggagaaggagctcaagttaaaagagaagcagattgaagtac 16113329  T
Q  108 aagtcaa 114  Q
    |||||||    
T  16113330 aagtcaa 16113336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 195 - 232
Target Start/End: Original strand, 16113441 - 16113478
Alignment:
Q  195 aatcgggtaaatgttcttattcatctagtttattgaaa 232  Q
    |||||||||| |||||| ||||||||||||||||||||    
T  16113441 aatcgggtaagtgttctcattcatctagtttattgaaa 16113478  T

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Target: chr7 (Bit Score: 50; Significance: 1e-19; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 5 - 90
Target Start/End: Original strand, 19807760 - 19807845
Alignment:
Q  5 gagaagcaatttgaaggaaggtggaaagaacttgagttaaaagagaataagttcaaagtacaggtaaaggagttcaagttaaaaga 90  Q
    ||||| ||| |||||| ||||||||||||||| |||| ||||||||||||||||||||||| ||| || ||| |||||||||||||    
T  19807760 gagaatcaaattgaagaaaggtggaaagaactcgagtcaaaagagaataagttcaaagtactggtcaaagagctcaagttaaaaga 19807845  T

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Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 196 - 292
Target Start/End: Original strand, 19807963 - 19808059
Alignment:
Q  196 atcgggtaaatgttcttattcatctagtttattgaaagagtttcaatacaacggttcctcttaatgatgatgacaatttttataacccgatctacat 292  Q
    |||||||||| ||||||||||||||||||||| ||| |||||||| | || | ||| || || |||||| ||| | |||| |||||| |||||||||    
T  19807963 atcgggtaaaagttcttattcatctagtttatagaaggagtttcatttcagctgtttctttttatgatgttgatatttttaataacctgatctacat 19808059  T

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Target: chr5 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 195 - 336
Target Start/End: Original strand, 33561135 - 33561281
Alignment:
Q  195 aatcgggtaaatgttcttattcatctagtttattgaaagagtttcaatacaacggttcctcttaatgatgatgacaattt----ttataacccgatctac 290  Q
    |||| ||||||||||||| ||||||||||||||||||||| ||| | || ||  |||||||| | |||||||||  ||||    ||||| || |||||||    
T  33561135 aatccggtaaatgttcttcttcatctagtttattgaaagaattttattataagtgttcctctcagtgatgatgatgattttttgttatatcctgatctac 33561234  T
Q  291 atagttgtttaaaaatatttttaatcatgttaatgttt-tatgtctt 336  Q
     || |  |||||| | |||||||||||||||||||||| ||||||||    
T  33561235 ttaatcctttaaacacatttttaatcatgttaatgtttgtatgtctt 33561281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 200 - 240
Target Start/End: Original strand, 17059602 - 17059642
Alignment:
Q  200 ggtaaatgttcttattcatctagtttattgaaagagtttca 240  Q
    |||||||||| |||||||||||||||||| ||||| |||||    
T  17059602 ggtaaatgttgttattcatctagtttattaaaagaatttca 17059642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 211 - 326
Target Start/End: Original strand, 45342187 - 45342305
Alignment:
Q  211 ttattcatctagtttattgaaagagtttcaatacaacggttcctcttaatgatgatgacaatttttataacccgatctacatagttgtttaaaa---ata 307  Q
    |||||||||||||||||||||||| ||||| | ||||  || || ||  ||||| ||| | |||| |||||| |||||||||| |  |||||||   |||    
T  45342187 ttattcatctagtttattgaaagaatttcatttcaactatttcttttgttgatgttgatatttttaataacctgatctacatattcttttaaaaaatata 45342286  T
Q  308 tttttaatcatgttaatgt 326  Q
    | |||||| ||||||||||    
T  45342287 tgtttaatgatgttaatgt 45342305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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