View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9917A_low_69 (Length: 345)
Name: NF9917A_low_69
Description: NF9917A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9917A_low_69 |
 | |
|
| [»] chr7 (7 HSPs) |
| |
|
Alignment Details
Target: chr7 (Bit Score: 296; Significance: 1e-166; HSPs: 7)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 6 - 345
Target Start/End: Complemental strand, 45282648 - 45282309
Alignment:
| Q |
6 |
agaaacagtatatgagaaaaagtggcatcactctcaaaattcatttttgaagaaaacataactaacattgaaaagatatagatacacatataacattgac |
105 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45282648 |
agaaagagtatatgagaaaaagtggcatcactctcaaaattcatttttgaagaaaacataactaacattgaaaagatatagatacacatataacattgac |
45282549 |
T |
|
| Q |
106 |
atatatagccaatgtgattgaaattactaattaattgattatccatgaatgcagccaacaccgcaatggggttcattggaaaggcaatgacatttgaaaa |
205 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
45282548 |
atatatagccaatgtgatcgaaattactaattaattgattatccatgaatgcagccaacaccgcaatggggttcattggaaaggcaatgacatttgagaa |
45282449 |
T |
|
| Q |
206 |
cacagccggtcctgatggtcaccaagccgtggcatttagaaacgtaggagatatgtctgctttggtgggttgccatatcctaggttaccaagacagcttg |
305 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||| | |||||||||||||||||| |
|
|
| T |
45282448 |
cacagccggtcctgatggtcaccaagctgtggcatttagaaaccaaggagatatgtctgctttggtgggttgccatatcgtgggttaccaagacagcttg |
45282349 |
T |
|
| Q |
306 |
tatgtgcaaagcaacaggcagtgctaccgcaattgtcttg |
345 |
Q |
| |
|
||||| ||||||||||| |||| ||||||||||||||||| |
|
|
| T |
45282348 |
tatgttcaaagcaacagacagtactaccgcaattgtcttg |
45282309 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 6 - 345
Target Start/End: Complemental strand, 45274405 - 45274066
Alignment:
| Q |
6 |
agaaacagtatatgagaaaaagtggcatcactctcaaaattcatttttgaagaaaacataactaacattgaaaagatatagatacacatataacattgac |
105 |
Q |
| |
|
||||| ||||||| ||||||||| ||||||||||||||||| ||||||||||||||||||||| ||||||||||| | | ||| ||||||||||||||| |
|
|
| T |
45274405 |
agaaagagtatataagaaaaagtagcatcactctcaaaatttatttttgaagaaaacataactcgcattgaaaagagaaatatatacatataacattgac |
45274306 |
T |
|
| Q |
106 |
atatatagccaatgtgattgaaattactaattaattgattatccatgaatgcagccaacaccgcaatggggttcattggaaaggcaatgacatttgaaaa |
205 |
Q |
| |
|
||||||||||| |||||| |||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||| || |
|
|
| T |
45274305 |
atatatagccagtgtgatcgaaattactaattaattgattatccatgcgtgcagccaacaccgcaatagggttcattggaaaggcaatgacatttgagaa |
45274206 |
T |
|
| Q |
206 |
cacagccggtcctgatggtcaccaagccgtggcatttagaaacgtaggagatatgtctgctttggtgggttgccatatcctaggttaccaagacagcttg |
305 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||| |
|
|
| T |
45274205 |
cacagccggtcctgatggtcaccaagctgtggcatttagaaacgtaggagatatgtctgctttggtgggttgccatatcgtgggttaccaagacagcttg |
45274106 |
T |
|
| Q |
306 |
tatgtgcaaagcaacaggcagtgctaccgcaattgtcttg |
345 |
Q |
| |
|
||||| |||||||||||||||| ||||||||||||||||| |
|
|
| T |
45274105 |
tatgttcaaagcaacaggcagtactaccgcaattgtcttg |
45274066 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 161; E-Value: 8e-86
Query Start/End: Original strand, 12 - 337
Target Start/End: Complemental strand, 45270870 - 45270547
Alignment:
| Q |
12 |
agtatatgagaaaaagtggcatcactctcaaaattcatttttgaagaaaacat-aactaacattgaaaagatatagatacacatataacattgacatata |
110 |
Q |
| |
|
|||| ||| |||| ||| ||||||||||||||||||||||||||| ||||||| |||| |||||||||||||||| ||| | | | ||| | ||||| |
|
|
| T |
45270870 |
agtagatgtgaaatagtagcatcactctcaaaattcatttttgaaaaaaacattaactcacattgaaaagatatatatatagaca---catacatatata |
45270774 |
T |
|
| Q |
111 |
tagccaatgtgattgaaattactaattaattgattatccatgaatgcagccaacaccgcaatggggttcattggaaaggcaatgacatttgaaaacacag |
210 |
Q |
| |
|
||||| ||| || ||| |||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
45270773 |
tagccggtgttatagaagttactaattaattgatcatccatgcatgcagccaacaccgcaatggggttcattggaaaggcaatgacatttgagaacacag |
45270674 |
T |
|
| Q |
211 |
ccggtcctgatggtcaccaagccgtggcatttagaaacgtaggagatatgtctgctttggtgggttgccatatcctaggttaccaagacagcttgtatgt |
310 |
Q |
| |
|
||||||||| ||| ||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||| || |
|
|
| T |
45270673 |
ccggtcctgccggtatgcaagctgtggcatttagaaacataggagatatgtctgctttggtgggttgccatatcgtaggttaccaagacactttgtacgt |
45270574 |
T |
|
| Q |
311 |
gcaaagcaacaggcagtgctaccgcaa |
337 |
Q |
| |
|
|||| ||||||||| | ||||||||| |
|
|
| T |
45270573 |
tcaaaccaacaggcaattctaccgcaa |
45270547 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 154; E-Value: 1e-81
Query Start/End: Original strand, 93 - 341
Target Start/End: Complemental strand, 45293904 - 45293653
Alignment:
| Q |
93 |
atataacattgacatatata---gccaatgtgattgaaattactaattaattgattatccatgaatgcagccaacaccgcaatggggttcattggaaagg |
189 |
Q |
| |
|
|||||||||||||| ||||| ||| |||||| ||| |||||||||||||||| ||||||| ||||||||||||||||| |||||||||||||||||| |
|
|
| T |
45293904 |
atataacattgacacatataatagccggtgtgatcgaagttactaattaattgatcatccatgcatgcagccaacaccgcattggggttcattggaaagg |
45293805 |
T |
|
| Q |
190 |
caatgacatttgaaaacacagccggtcctgatggtcaccaagccgtggcatttagaaacgtaggagatatgtctgctttggtgggttgccatatcctagg |
289 |
Q |
| |
|
||||||||||||| |||||||||||||||| |||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||| || |
|
|
| T |
45293804 |
caatgacatttgagaacacagccggtcctgctggtcaccaagctgtggcatttagaaaccaaggagatatgtctgctttggtgggttgccatatcctggg |
45293705 |
T |
|
| Q |
290 |
ttaccaagacagcttgtatgtgcaaagcaacaggcagtgctaccgcaattgt |
341 |
Q |
| |
|
||||||||||| ||||| || |||| ||||||||| | ||||||||||||| |
|
|
| T |
45293704 |
ttaccaagacactttgtacgttcaaaccaacaggcaattctaccgcaattgt |
45293653 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 154; E-Value: 1e-81
Query Start/End: Original strand, 93 - 341
Target Start/End: Complemental strand, 45302864 - 45302613
Alignment:
| Q |
93 |
atataacattgacatatata---gccaatgtgattgaaattactaattaattgattatccatgaatgcagccaacaccgcaatggggttcattggaaagg |
189 |
Q |
| |
|
|||||||||||||| ||||| ||| |||||| ||| |||||||||||||||| ||||||| ||||||||||||||||| |||||||||||||||||| |
|
|
| T |
45302864 |
atataacattgacacatataatagccggtgtgatcgaagttactaattaattgatcatccatgcatgcagccaacaccgcattggggttcattggaaagg |
45302765 |
T |
|
| Q |
190 |
caatgacatttgaaaacacagccggtcctgatggtcaccaagccgtggcatttagaaacgtaggagatatgtctgctttggtgggttgccatatcctagg |
289 |
Q |
| |
|
||||||||||||| |||||||||||||||| |||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||| || |
|
|
| T |
45302764 |
caatgacatttgagaacacagccggtcctgctggtcaccaagctgtggcatttagaaaccaaggagatatgtctgctttggtgggttgccatatcctggg |
45302665 |
T |
|
| Q |
290 |
ttaccaagacagcttgtatgtgcaaagcaacaggcagtgctaccgcaattgt |
341 |
Q |
| |
|
||||||||||| ||||| || |||| ||||||||| | ||||||||||||| |
|
|
| T |
45302664 |
ttaccaagacactttgtacgttcaaaccaacaggcaattctaccgcaattgt |
45302613 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 17 - 82
Target Start/End: Complemental strand, 45294022 - 45293957
Alignment:
| Q |
17 |
atgagaaaaagtggcatcactctcaaaattcatttttgaagaaaacataactaacattgaaaagat |
82 |
Q |
| |
|
|||||||| ||| |||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
45294022 |
atgagaaatagtaacatcactctcaaaattcatttttgaagaaaacataactcacattgaaaagat |
45293957 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 17 - 82
Target Start/End: Complemental strand, 45302982 - 45302917
Alignment:
| Q |
17 |
atgagaaaaagtggcatcactctcaaaattcatttttgaagaaaacataactaacattgaaaagat |
82 |
Q |
| |
|
|||||||| ||| |||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
45302982 |
atgagaaatagtaacatcactctcaaaattcatttttgaagaaaacataactcacattgaaaagat |
45302917 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University