View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9917A_low_7 (Length: 464)
Name: NF9917A_low_7
Description: NF9917A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9917A_low_7 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 417; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 417; E-Value: 0
Query Start/End: Original strand, 20 - 464
Target Start/End: Original strand, 3332102 - 3332546
Alignment:
| Q |
20 |
ctaaatatatggtcaaaccagaagcagcgggcggagcaggtggtggaagaaacgatccggccagcgaaagaatctcgaaccttccatgaagtgtaacaac |
119 |
Q |
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| T |
3332102 |
ctaaatatatggtcaaaccagaagcagcgggcggagcaggtggtggaagaaacgatccagccagcgaaagaatctcgaaccttccatgaagtgtaacaac |
3332201 |
T |
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| Q |
120 |
agccccaggagaagccggttgccttagtgtcacgtttgtaaccgtccctgtcccactcatgatgcaaacgcctctttgacggcgtctagcaaagttgttg |
219 |
Q |
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| T |
3332202 |
agctccaggagaagccggttgccttagtgtcacgtttgtaaccgtccctgtcccactcatgatgcaaacgcctctttgacggcgtctagcgaagttgttg |
3332301 |
T |
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| Q |
220 |
acactttcaacaacgtcacaaccgtcggcgacttccatcacgtgagctttcgaggcgtttgcgctgtcacgtgtgatgataatcggtggttttggtttgt |
319 |
Q |
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| T |
3332302 |
acactttcaacaacgtcacaaccgtctgcaacttccatcacgtgagttttcaaggcgtttgcgctgtcacgtgtgatgataatcggtggttttggtttgt |
3332401 |
T |
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| Q |
320 |
ttttggatccagctggtcttcctcttggtcttcttgtcattgaatcggtgtcgccaccggaaccacctcctccggattctaacttggggctaaaatctgt |
419 |
Q |
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| T |
3332402 |
ttttggatccagctggtcttcctcttggtcttcttgtcattgaatcggtgtcgccaccggaaccacctcctccggattctaacttggggctaaaatctgt |
3332501 |
T |
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| Q |
420 |
gctgaacttgttgttgctgttttcttctcggtttgtgaggttgag |
464 |
Q |
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| T |
3332502 |
gctgaacttgttgttgctgttttcttctcggtttgtgaggttgag |
3332546 |
T |
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Target: chr8 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 274 - 354
Target Start/End: Original strand, 13212814 - 13212894
Alignment:
| Q |
274 |
gcgtttgcgctgtcacgtgtgatgataatcggtggttttggtttgtttttggatccagctggtcttcctcttggtcttctt |
354 |
Q |
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| T |
13212814 |
gcgttcgcgctgtccctcgtgatgatgataggtggttttggtttgtttttcgaacctgctggtcttcctcttggtcttctt |
13212894 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 304 - 352
Target Start/End: Original strand, 32803230 - 32803278
Alignment:
| Q |
304 |
ggtggttttggtttgtttttggatccagctggtcttcctcttggtcttc |
352 |
Q |
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| T |
32803230 |
ggtggttttggtctgtttttggatccaggtggtcttcctcttggtcttc |
32803278 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 304 - 352
Target Start/End: Complemental strand, 16578665 - 16578617
Alignment:
| Q |
304 |
ggtggttttggtttgtttttggatccagctggtcttcctcttggtcttc |
352 |
Q |
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| T |
16578665 |
ggtggttttggtttgttttttgaaccgggtggtcttcctcttggtcttc |
16578617 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 317 - 352
Target Start/End: Original strand, 32809703 - 32809738
Alignment:
| Q |
317 |
tgtttttggatccagctggtcttcctcttggtcttc |
352 |
Q |
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| T |
32809703 |
tgtttttggatccaggtggtcttcctcttggtcttc |
32809738 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 291 - 344
Target Start/End: Complemental strand, 46200964 - 46200911
Alignment:
| Q |
291 |
tgtgatgataatcggtggttttggtttgtttttggatccagctggtcttcctct |
344 |
Q |
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| T |
46200964 |
tgtgatgataataggtggttttggtttgttttttgagccaggtggacgtcctct |
46200911 |
T |
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