View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9917A_low_71 (Length: 343)
Name: NF9917A_low_71
Description: NF9917A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9917A_low_71 |
 | |
|
| [»] chr8 (2 HSPs) |
| |
|
Alignment Details
Target: chr8 (Bit Score: 119; Significance: 9e-61; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 119; E-Value: 9e-61
Query Start/End: Original strand, 225 - 343
Target Start/End: Complemental strand, 32727819 - 32727701
Alignment:
| Q |
225 |
ggaaagactgtcatgttcacagcaccacgagtctagcaggaaaaatacgatagattaagtaagtaaagtactctcatctcatgataatattgggcacagg |
324 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32727819 |
ggaaagactgtcatgttcacagcaccacgagtctagcaggaaaaatacgatagattaagtaagtaaagtactctcatctcatgataatattgggcacagg |
32727720 |
T |
|
| Q |
325 |
aggaaaaagaagtaacaaa |
343 |
Q |
| |
|
||||||||||||||||||| |
|
|
| T |
32727719 |
aggaaaaagaagtaacaaa |
32727701 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 13 - 125
Target Start/End: Complemental strand, 32728035 - 32727919
Alignment:
| Q |
13 |
agatcatccatttatggaaagctttggaacatgattattaaagcacattctgagtcccaatgtgtttttgtagtttaagagaaagggaaata----tata |
108 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
32728035 |
agatcatccatttatggaaagctttggaacacgattattaaagcacattctgagtcccaatgtgtttttgtagtttaagagaaagggaaatatatatata |
32727936 |
T |
|
| Q |
109 |
attactgtatcttctgg |
125 |
Q |
| |
|
||||||||||||||||| |
|
|
| T |
32727935 |
attactgtatcttctgg |
32727919 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University