View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9917A_low_74 (Length: 341)
Name: NF9917A_low_74
Description: NF9917A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9917A_low_74 |
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Alignment Details
Target: chr2 (Bit Score: 302; Significance: 1e-170; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 302; E-Value: 1e-170
Query Start/End: Original strand, 7 - 328
Target Start/End: Complemental strand, 5827291 - 5826970
Alignment:
| Q |
7 |
gttgcctcatcaagtaaaagtattctagggtttttcaatatagctcttgcaattgctatacgttgtttttgcccacctgataactgtgtgcctctttcgc |
106 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
5827291 |
gttgcctcatcaagtaaaagtattctagggtttttcaatatagctcttgcaattgctatacgttgtttttgtccacctgataactgtgtgcctctttcgc |
5827192 |
T |
|
| Q |
107 |
ctaccgatgtattgtaaccacctggaagagagcttataaagttgtatgcattggctgcgttagctgctgcaattatctcatcctccgtagcacctccttc |
206 |
Q |
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||||||| ||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5827191 |
ctaccgaagtattgtaaccacctggaagagagcttatgaagttgtgtgcattggctgcgttagctgctgcaattatctcatcctccgtagcacctccttc |
5827092 |
T |
|
| Q |
207 |
tttgccataagctatgttggcacgaatgctttcgttgaaaagaataggctcttgaccaaccaaacccatctgttgtctcaaccagcttagtttgaaagtt |
306 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
5827091 |
tttgccataagctatgttggcacgaatgctttcgttgaaaagaataggctcttgaccaaccaaacccatttgttgtctcaaccagcttagtttgaaagtt |
5826992 |
T |
|
| Q |
307 |
ttgatattcagtccatctagta |
328 |
Q |
| |
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|||||||||||||||||||||| |
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| T |
5826991 |
ttgatattcagtccatctagta |
5826970 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 10 - 328
Target Start/End: Complemental strand, 5768835 - 5768517
Alignment:
| Q |
10 |
gcctcatcaagtaaaagtattctagggtttttcaatatagctcttgcaattgctatacgttgtttttgcccacctgataactgtgtgcctctttcgccta |
109 |
Q |
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||||| ||||| ||||||||| | |||||||||| || ||||||||||| || ||||| || || || || ||||||| ||||||||||||||| || | |
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| T |
5768835 |
gcctcgtcaagcaaaagtattttggggtttttcagcatggctcttgcaatagcaatacgctgcttctgtcctcctgatagctgtgtgcctctttccccga |
5768736 |
T |
|
| Q |
110 |
ccgatgtattgtaaccacctggaagagagcttataaagttgtatgcattggctgcgttagctgctgcaattatctcatcctccgtagcacctccttcttt |
209 |
Q |
| |
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| || || | |||||| ||||||||||||||| || |||| |||||||||||| ||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
5768735 |
cagaggtgtcataaccatttggaagagagcttatgaaattgtgtgcattggctgctttagctgctgcaattatctcatcctccatagcacctccttcttt |
5768636 |
T |
|
| Q |
210 |
gccataagctatgttggcacgaatgctttcgttgaaaagaataggctcttgaccaaccaaacccatctgttgtctcaaccagcttagtttgaaagttttg |
309 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
5768635 |
gccataagctatgttggcacgaatgctttcgttgaaaagaataggctcttgaccaaccaaacccatctgttgtctcaaccagcttagtctgaaagttttt |
5768536 |
T |
|
| Q |
310 |
atattcagtccatctagta |
328 |
Q |
| |
|
|||| || ||||||||||| |
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| T |
5768535 |
atatccactccatctagta |
5768517 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 139 - 328
Target Start/End: Original strand, 5829742 - 5829931
Alignment:
| Q |
139 |
cttataaagttgtatgcattggctgcgttagctgctgcaattatctcatcctccgtagcacctccttctttgccataagctatgttggcacgaatgcttt |
238 |
Q |
| |
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||||| ||| ||| |||||| |||||||||||||||||||| ||||||||||| |||||||| |||||||| |||||| ||||||| ||||||||||||| |
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|
| T |
5829742 |
cttatgaagctgtgtgcatttgctgcgttagctgctgcaatgatctcatcctctgtagcacccccttcttttccataacctatgttagcacgaatgcttt |
5829841 |
T |
|
| Q |
239 |
cgttgaaaagaataggctcttgaccaaccaaacccatctgttgtctcaaccagcttagtttgaaagttttgatattcagtccatctagta |
328 |
Q |
| |
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||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||| | |||||||||||| || || ||||||||||| |
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| T |
5829842 |
cgttgaaaagaataggctcttgaccaaccaaccccatttgttgtctcaaccagcttaatctgaaagttttgagatccactccatctagta |
5829931 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 7 - 105
Target Start/End: Complemental strand, 5794883 - 5794793
Alignment:
| Q |
7 |
gttgcctcatcaagtaaaagtattctagggtttttcaatatagctcttgcaattgctatacgttgtttttgcccacctgataactgtgtgcctctttcg |
105 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||||||||||| || ||||||||| ||||||| ||||||||||||||||||| |
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| T |
5794883 |
gttgcctcatcaagtaaaagtattctagggtctttcaatatagctcttgca--------acattgtttttgtccacctggtaactgtgtgcctctttcg |
5794793 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 166; Significance: 8e-89; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 166; E-Value: 8e-89
Query Start/End: Original strand, 7 - 328
Target Start/End: Original strand, 29327124 - 29327445
Alignment:
| Q |
7 |
gttgcctcatcaagtaaaagtattctagggtttttcaatatagctcttgcaattgctatacgttgtttttgcccacctgataactgtgtgcctctttcgc |
106 |
Q |
| |
|
|||||||||||||| ||||||||| |||||||||||| || ||||||||||| || || || || || || || || |||| |||||||||||||||| |
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| T |
29327124 |
gttgcctcatcaagcaaaagtattttagggtttttcagcatggctcttgcaatcgcaatgcgctgcttctgtcctccagatagttgtgtgcctctttcgc |
29327223 |
T |
|
| Q |
107 |
ctaccgatgtattgtaaccacctggaagagagcttataaagttgtatgcattggctgcgttagctgctgcaattatctcatcctccgtagcacctccttc |
206 |
Q |
| |
|
| || || || | |||||| | |||||||| ||||| ||||||| ||||||||||||||| |||||||| || |||||||||||||||||||| |||| |
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| T |
29327224 |
caacagaagtgtcataaccatcaggaagagaacttatgaagttgtgtgcattggctgcgttcgctgctgctatgatctcatcctccgtagcaccatcttc |
29327323 |
T |
|
| Q |
207 |
tttgccataagctatgttggcacgaatgctttcgttgaaaagaataggctcttgaccaaccaaacccatctgttgtctcaaccagcttagtttgaaagtt |
306 |
Q |
| |
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||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| | |||||||| |
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| T |
29327324 |
tttaccataagctatgttggcgcgaatgctttcgttgaaaagaataggctcttgaccaaccaaacccatttgttgtctcaaccagcttattctgaaagtt |
29327423 |
T |
|
| Q |
307 |
ttgatattcagtccatctagta |
328 |
Q |
| |
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||||||| || ||||||||||| |
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| T |
29327424 |
ttgatatccactccatctagta |
29327445 |
T |
|
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