View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9917A_low_77 (Length: 337)
Name: NF9917A_low_77
Description: NF9917A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9917A_low_77 |
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| [»] scaffold0889 (1 HSPs) |
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| [»] scaffold0870 (1 HSPs) |
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| [»] scaffold1033 (1 HSPs) |
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| [»] scaffold1029 (1 HSPs) |
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Alignment Details
Target: scaffold0889 (Bit Score: 282; Significance: 1e-158; HSPs: 1)
Name: scaffold0889
Description:
Target: scaffold0889; HSP #1
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 10 - 332
Target Start/End: Complemental strand, 4280 - 3962
Alignment:
| Q |
10 |
aatatgtggagctatttatagtttaacattgcacatggttcatattttctcttttgagctactgaatgattgaaggtcaaaatatgtatgcagcatgtgc |
109 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4280 |
aatatgtggagctatttatagtttaacattgcacatggttcatatttgctcttttgagctactgaatgattgaaggtcaaaatatgtatgcagcatgtgc |
4181 |
T |
|
| Q |
110 |
attggagcacattaatttattggttataatattgatgacaactgataaataaaataagcagtttaagtttgccaatttttgttgcattatgttactgact |
209 |
Q |
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|||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
4180 |
attggaacacattaatttattagttataatattgatgacaactgataaataaaataagcagtttaagtttgccaatgtttgttgcattatgttactgact |
4081 |
T |
|
| Q |
210 |
tcatgttgtctattcatgacttcctacacctacactaaataacaataattaatttaaaggagaacatgtttcttatattaaatatataaacaaacatcaa |
309 |
Q |
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| T |
4080 |
tcatgttgtctattcatgacttcctacacctacactaaataacaataattaatttaaaggagaacatgtttctcatattaaatatata----aacatcaa |
3985 |
T |
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| Q |
310 |
tttaaaggagaacgcatgtttct |
332 |
Q |
| |
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||||||||||||||| ||||||| |
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| T |
3984 |
tttaaaggagaacgcgtgtttct |
3962 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0870 (Bit Score: 282; Significance: 1e-158; HSPs: 1)
Name: scaffold0870
Description:
Target: scaffold0870; HSP #1
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 10 - 332
Target Start/End: Complemental strand, 4484 - 4166
Alignment:
| Q |
10 |
aatatgtggagctatttatagtttaacattgcacatggttcatattttctcttttgagctactgaatgattgaaggtcaaaatatgtatgcagcatgtgc |
109 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4484 |
aatatgtggagctatttatagtttaacattgcacatggttcatatttgctcttttgagctactgaatgattgaaggtcaaaatatgtatgcagcatgtgc |
4385 |
T |
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| Q |
110 |
attggagcacattaatttattggttataatattgatgacaactgataaataaaataagcagtttaagtttgccaatttttgttgcattatgttactgact |
209 |
Q |
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|||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
4384 |
attggaacacattaatttattagttataatattgatgacaactgataaataaaataagcagtttaagtttgccaatgtttgttgcattatgttactgact |
4285 |
T |
|
| Q |
210 |
tcatgttgtctattcatgacttcctacacctacactaaataacaataattaatttaaaggagaacatgtttcttatattaaatatataaacaaacatcaa |
309 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||| |
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| T |
4284 |
tcatgttgtctattcatgacttcctacacctacactaaataacaataattaatttaaaggagaacatgtttctcatattaaatatata----aacatcaa |
4189 |
T |
|
| Q |
310 |
tttaaaggagaacgcatgtttct |
332 |
Q |
| |
|
||||||||||||||| ||||||| |
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| T |
4188 |
tttaaaggagaacgcgtgtttct |
4166 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 147; Significance: 2e-77; HSPs: 7)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 13 - 332
Target Start/End: Original strand, 28580547 - 28580863
Alignment:
| Q |
13 |
atgtggagctatttatagtttaacattgcacatggttcatattttctcttttgagctact-gaatgattgaaggtcaaaatatgtatgcagcatgtgcat |
111 |
Q |
| |
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|||| ||||||||||||| ||||||| |||| ||||||||||| |||||||||||||| | || |||||||||||| ||||||||||| |||||||| |
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| T |
28580547 |
atgtagagctatttatagcataacatttcacacggttcatatttgttcttttgagctacttgtat-attgaaggtcaacatatgtatgcat-atgtgcat |
28580644 |
T |
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| Q |
112 |
tggagcacattaatttattg-gttataatattgatgacaactgataaataaaataagcagtttaagtttg--ccaatttttgttgcattatgtt-actga |
207 |
Q |
| |
|
|| | |||||||||||||| ||||||||||||||| || ||||||||||||||| ||||||||||||| | || |||||||||||||||| ||| | |
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| T |
28580645 |
tgtaacacattaatttattcagttataatattgatggcagctgataaataaaatagacagtttaagtttgaaacgatgtttgttgcattatgttaactca |
28580744 |
T |
|
| Q |
208 |
cttcatgttgtctattcatgacttcctacacctacactaaataacaataattaatttaaaggagaacatgtttcttatattaaatatataaacaaacatc |
307 |
Q |
| |
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|||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
28580745 |
cttcatgttgtctattcatgactt------tctactctaaataacaataattaatttaaaggagaacatgtttcttatattaaatatataaacaaaaatt |
28580838 |
T |
|
| Q |
308 |
aatttaaaggagaacgcatgtttct |
332 |
Q |
| |
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||||||||||||||| ||||||||| |
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| T |
28580839 |
aatttaaaggagaacacatgtttct |
28580863 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 36 - 298
Target Start/End: Original strand, 28586731 - 28586990
Alignment:
| Q |
36 |
cattgcacatggttcatattt-tctctt-ttgagctactgaatgattgaaggtcaaaatatgtatgcagcatgtgcat--tggagcacattaatttattg |
131 |
Q |
| |
|
||||||| ||||||||||| | ||| || ||||||||||| |||||||||||||||||||||||||||||| ||||| || | ||||| |||||||| |
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| T |
28586731 |
cattgcatatggttcatatatgtcttttgttgagctactggctgattgaaggtcaaaatatgtatgcagcatatgcatattgtaacacataaatttattt |
28586830 |
T |
|
| Q |
132 |
g-ttataatattgatgacaactgataaataaaataagcagtttaagtttgccaatttttgttgcattatgttactgacttcatgttgtctattcatgact |
230 |
Q |
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||||||||||| || |||||||||||||||||||||||| ||||||||||| |||||| |||||||| ||||||| |||||||| ||||||||| |
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| T |
28586831 |
aattataatattggtggatactgataaataaaataagcagttttagtttgccaatgtttgtttaattatgttgctgacttgctgttgtctgttcatgact |
28586930 |
T |
|
| Q |
231 |
tcctacacctacactaaataacaataattaatttaaaggagaacatgtttcttatattaaatatataa |
298 |
Q |
| |
|
| | || ||||||| |||||| ||||||||||| |||||| |||||||||||| ||||||||| |
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|
| T |
28586931 |
t--ttca---acactaagtaacaaaaattaatttaa---agaacaagtttcttatatttaatatataa |
28586990 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 11 - 146
Target Start/End: Original strand, 28575456 - 28575592
Alignment:
| Q |
11 |
atatgtggagctatttatagtttaacattgcacatggttcatattttctcttttgagctactgaatgattgaaggtcaaaatatgtatgcagcatgtgca |
110 |
Q |
| |
|
|||||| |||||||||||||||||||||||||| | ||||||||| |||||||||||||||| |||||||||||| || ||||||||||||||||| |
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| T |
28575456 |
atatgttgagctatttatagtttaacattgcactcgtttcatatttgctcttttgagctactggtagattgaaggtcagcatgtgtatgcagcatgtgca |
28575555 |
T |
|
| Q |
111 |
ttggagcacattaattta-ttggttataatattgatg |
146 |
Q |
| |
|
||| | |||||||||||| || ||||||||||||||| |
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|
| T |
28575556 |
ttgtaacacattaatttatttagttataatattgatg |
28575592 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 22 - 137
Target Start/End: Original strand, 28568724 - 28568841
Alignment:
| Q |
22 |
tatttatagtttaacattgcacatggttcatattttctcttttgagctactgaatgattgaaggtcaaaatatgtatgcagc--atgtgcattggagcac |
119 |
Q |
| |
|
||||||||| | |||||||||||| ||| |||||| | ||||||||||||||||||||||||||| |||||||||| || ||||| |||| | || |
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|
| T |
28568724 |
tatttatagctgaacattgcacatagttgatatttgttagtttgagctactgaatgattgaaggtcagcatatgtatgctgcatatgtgtattgtaagac |
28568823 |
T |
|
| Q |
120 |
attaatttattggttata |
137 |
Q |
| |
|
||||||||||| |||||| |
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|
| T |
28568824 |
attaatttattagttata |
28568841 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 192 - 291
Target Start/End: Original strand, 28575591 - 28575690
Alignment:
| Q |
192 |
tgcattatgttactgacttcatgttgtctattcatgacttcctacacctacactaaataacaata-----attaatttaaaggagaacatgtttcttata |
286 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||| | || |||||||||||||| | ||||||||||||||||||||||||||| || |
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|
| T |
28575591 |
tgcattatgtcgctgacttcatgttgtctattcatgactt--ttca---acactaaataacaaaacaaatattaatttaaaggagaacatgtttctttta |
28575685 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 250 - 294
Target Start/End: Original strand, 26316845 - 26316889
Alignment:
| Q |
250 |
aacaataattaatttaaaggagaacatgtttcttatattaaatat |
294 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||| |||||||| |
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|
| T |
26316845 |
aacattaattaatttaaaggagaacatgtttcttatgttaaatat |
26316889 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 245 - 288
Target Start/End: Original strand, 28569073 - 28569116
Alignment:
| Q |
245 |
taaataacaataattaatttaaaggagaacatgtttcttatatt |
288 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
28569073 |
taaataacaacgattaatttaaaggagaacatgtttcttatatt |
28569116 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1033 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: scaffold1033
Description:
Target: scaffold1033; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 11 - 130
Target Start/End: Complemental strand, 2993 - 2872
Alignment:
| Q |
11 |
atatgtggagctatttatagtttaacattgcacatggttcatattttctcttttgagctactgaatgattgaaggtcaaaatatgtatgcagc--atgtg |
108 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| | || ||||| | ||||| | ||||||||||||||||||||| |||||||||| || ||||| |
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|
| T |
2993 |
atatgtggagctatttatagtttaacattgcacacgatttttatttgttattttgggttactgaatgattgaaggtcaacatatgtatgctgcatatgtg |
2894 |
T |
|
| Q |
109 |
cattggagcacattaatttatt |
130 |
Q |
| |
|
|||| | |||||||||||||| |
|
|
| T |
2893 |
tattgtaacacattaatttatt |
2872 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1029 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: scaffold1029
Description:
Target: scaffold1029; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 11 - 130
Target Start/End: Complemental strand, 2993 - 2872
Alignment:
| Q |
11 |
atatgtggagctatttatagtttaacattgcacatggttcatattttctcttttgagctactgaatgattgaaggtcaaaatatgtatgcagc--atgtg |
108 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| | || ||||| | ||||| | ||||||||||||||||||||| |||||||||| || ||||| |
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|
| T |
2993 |
atatgtggagctatttatagtttaacattgcacacgatttttatttgttattttgggttactgaatgattgaaggtcaacatatgtatgctgcatatgtg |
2894 |
T |
|
| Q |
109 |
cattggagcacattaatttatt |
130 |
Q |
| |
|
|||| | |||||||||||||| |
|
|
| T |
2893 |
tattgtaacacattaatttatt |
2872 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 11 - 72
Target Start/End: Original strand, 5893024 - 5893085
Alignment:
| Q |
11 |
atatgtggagctatttatagtttaacattgcacatggttcatattttctcttttgagctact |
72 |
Q |
| |
|
|||||||||||||||||| ||| ||||||||||| ||||||||||| ||||||||||||||| |
|
|
| T |
5893024 |
atatgtggagctatttattgttgaacattgcacacggttcatatttgctcttttgagctact |
5893085 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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