View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9917A_low_83 (Length: 323)
Name: NF9917A_low_83
Description: NF9917A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9917A_low_83 |
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Alignment Details
Target: chr2 (Bit Score: 213; Significance: 1e-117; HSPs: 8)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 12 - 318
Target Start/End: Original strand, 2466645 - 2466930
Alignment:
| Q |
12 |
atactcaggttgtttggagaaactcacaacgtgttggatgtgccaaagtgagatgtgataataatagaggaacattcattacatgcaattacgacccacc |
111 |
Q |
| |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2466645 |
atacccaggttgtttggagaaactcacaacgtgttggatgtgccaaagtgagatgtgataataatagaggaacattcattacatgcaattacgacccacc |
2466744 |
T |
|
| Q |
112 |
aggcaactatgttggtgaaaagccatactaagtgcatgcttaatagaatgtttcaatttaagctatatatagaaaccataccatatgatggataaataaa |
211 |
Q |
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|||||||| ||||||||||||||||||||||| ||||| ||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
2466745 |
aggcaact---ttggtgaaaagccatactaagtg----------------tttcactttaagctata--tagaaaccataccatatgatggataaataaa |
2466823 |
T |
|
| Q |
212 |
taaataaatggcagggtaaacgtacgtacgtaatgagttcctgactcattatatttatagttatcatatgacatttctcgtattattggagtataataaa |
311 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||| |
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| T |
2466824 |
taaataaatggcagggtaaacgtacgtacgtaatgagttcctgactcattatatttatagttatcatatgatatttctcatattattggagtataataaa |
2466923 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 170; E-Value: 3e-91
Query Start/End: Original strand, 12 - 265
Target Start/End: Original strand, 2462597 - 2462832
Alignment:
| Q |
12 |
atactcaggttgtttggagaaactcacaacgtgttggatgtgccaaagtgagatgtgataataatagaggaacattcattacatgcaattacgacccacc |
111 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2462597 |
atacccaggttgtttggagaaactcacaacgtgttggatgtgccaaagtgagatgtgataataatagaggaacattcattacatgcaattacgacccacc |
2462696 |
T |
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| Q |
112 |
aggcaactatgttggtgaaaagccatactaagtgcatgcttaatagaatgtttcaatttaagctatatatagaaaccataccatatgatggataaataaa |
211 |
Q |
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|||||||||||||||||||||||||||||||| ||||||| ||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
2462697 |
aggcaactatgttggtgaaaagccatactaag----------------tgtttcactttaagc--tatatagaaaccataccatatgatggataaataaa |
2462778 |
T |
|
| Q |
212 |
taaataaatggcagggtaaacgtacgtacgtaatgagttcctgactcattatat |
265 |
Q |
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||||||||| |||||||||||||| ||||||||||||||| ||||||||||||| |
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| T |
2462779 |
taaataaattgcagggtaaacgtatgtacgtaatgagttcttgactcattatat |
2462832 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 12 - 138
Target Start/End: Complemental strand, 3063400 - 3063274
Alignment:
| Q |
12 |
atactcaggttgtttggagaaactcacaacgtgttggatgtgccaaagtgagatgtgataataatagaggaacattcattacatgcaattacgacccacc |
111 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3063400 |
atactcaggttgtttggagaaactcacaacgtgttggatgtgccaaagtgagatgtgataataatagaggaacattcattacatgcaattacgacccacc |
3063301 |
T |
|
| Q |
112 |
aggcaactatgttggtgaaaagccata |
138 |
Q |
| |
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||||||||||||||||||||||||||| |
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| T |
3063300 |
aggcaactatgttggtgaaaagccata |
3063274 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 14 - 148
Target Start/End: Original strand, 2458023 - 2458154
Alignment:
| Q |
14 |
actcaggttgtttggagaaactcacaacgtgttggatgtgccaaagtgagatgtgataataatagaggaacattcattacatgcaattacgacccaccag |
113 |
Q |
| |
|
||||||||||||||||||||| || | ||| |||||||||||||||| |||||| |||||| |||| |||||||||| ||||||||||| ||||||| |
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| T |
2458023 |
actcaggttgtttggagaaacacaaagcgtattggatgtgccaaagtaagatgt---aataatggaggcacattcattatttgcaattacgatccaccag |
2458119 |
T |
|
| Q |
114 |
gcaactatgttggtgaaaagccatactaagtgcat |
148 |
Q |
| |
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|||||||||||||| |||||||||||||||||||| |
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| T |
2458120 |
gcaactatgttggtcaaaagccatactaagtgcat |
2458154 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 14 - 145
Target Start/End: Original strand, 2469972 - 2470100
Alignment:
| Q |
14 |
actcaggttgtttggagaaactcacaacgtgttggatgtgccaaagtgagatgtgataataatagaggaacattcattacatgcaattacgacccaccag |
113 |
Q |
| |
|
|||||||| |||||||||||| ||||||| |||||||||||||||||| |||| ||||| |||||||||||||||| ||||||||||||||||||| |
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| T |
2469972 |
actcaggtggtttggagaaacacacaacggattggatgtgccaaagtgaaatgt---aataacggaggaacattcattacttgcaattacgacccaccag |
2470068 |
T |
|
| Q |
114 |
gcaactatgttggtgaaaagccatactaagtg |
145 |
Q |
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|||||||| |||| |||| |||||||||||| |
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| T |
2470069 |
gcaactatattggcgaaagaccatactaagtg |
2470100 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 12 - 142
Target Start/End: Original strand, 2474241 - 2474368
Alignment:
| Q |
12 |
atactcaggttgtttggagaaactcacaacgtgttggatgtgccaaagtgagatgtgataataatagaggaacattcattacatgcaattacgacccacc |
111 |
Q |
| |
|
|||||||||| |||||||||||| || ||||| |||||||||||||||||| ||||| ||||| |||||||||||||||| |||||||||||||| || |
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| T |
2474241 |
atactcaggtggtttggagaaacacaaaacgtattggatgtgccaaagtgaaatgtg---ataatggaggaacattcattacttgcaattacgacccccc |
2474337 |
T |
|
| Q |
112 |
aggcaactatgttggtgaaaagccatactaa |
142 |
Q |
| |
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||||||||| |||| |||| ||||||||| |
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| T |
2474338 |
tggcaactatattggcgaaagaccatactaa |
2474368 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 35 - 111
Target Start/End: Original strand, 2471017 - 2471090
Alignment:
| Q |
35 |
tcacaacgtgttggatgtgccaaagtgagatgtgataataatagaggaacattcattacatgcaattacgacccacc |
111 |
Q |
| |
|
||||||||||||||||||| |||||||||||||| ||||| |||| ||||||||||| |||||||| |||||||| |
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| T |
2471017 |
tcacaacgtgttggatgtggcaaagtgagatgtg---ataatggaggcacattcattacttgcaattatgacccacc |
2471090 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 12 - 73
Target Start/End: Original strand, 2486515 - 2486576
Alignment:
| Q |
12 |
atactcaggttgtttggagaaactcacaacgtgttggatgtgccaaagtgagatgtgataat |
73 |
Q |
| |
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||||||||||||||||| ||| |||| |||||||||||||| |||||||| |||||||||| |
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| T |
2486515 |
atactcaggttgtttgggaaaaatcactacgtgttggatgtggcaaagtgaaatgtgataat |
2486576 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 127; Significance: 1e-65; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 12 - 138
Target Start/End: Original strand, 18015920 - 18016046
Alignment:
| Q |
12 |
atactcaggttgtttggagaaactcacaacgtgttggatgtgccaaagtgagatgtgataataatagaggaacattcattacatgcaattacgacccacc |
111 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18015920 |
atactcaggttgtttggagaaactcacaacgtgttggatgtgccaaagtgagatgtgataataatagaggaacattcattacatgcaattacgacccacc |
18016019 |
T |
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| Q |
112 |
aggcaactatgttggtgaaaagccata |
138 |
Q |
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||||||||||||||||||||||||||| |
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| T |
18016020 |
aggcaactatgttggtgaaaagccata |
18016046 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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