View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9917A_low_93 (Length: 312)
Name: NF9917A_low_93
Description: NF9917A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9917A_low_93 |
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Alignment Details
Target: chr1 (Bit Score: 262; Significance: 1e-146; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 20 - 310
Target Start/End: Original strand, 3702617 - 3702907
Alignment:
| Q |
20 |
gaactttgtgcttgttgtgttttgcataacatttgtgagatgaaaggcgagaaaatggatcctgaacttatggttgatattgttgatgatgaaatggttc |
119 |
Q |
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| T |
3702617 |
gaactttgtgcttgttgtgttttgcataacatttgtgagatgaaaggtgagaaaatggatcctgaacttatggttgatattgttgatgatgaaatggttc |
3702716 |
T |
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| Q |
120 |
ctgaagttagtttgagatcagttaattcattgaaggctagagatgctattgctcataatcttttgcgtcatggtttagcaggcacnnnnnnnctttaaac |
219 |
Q |
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| T |
3702717 |
ctgaagttagtttgagatcagttaattcattgaaggctagagatgctattgctcataatcttttgcatcatggtttagcaggcacttcttttctttaaac |
3702816 |
T |
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| Q |
220 |
ttataagattaagaactttgtgttatttgttgtattttgatcattgttatatgcatctctgagaacatgattttattttttgctgtttgtt |
310 |
Q |
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| T |
3702817 |
ttataagattaagaactttgtgttatttgttgtattttgatcattgttatatgcatctctgagaacatgattttattttttgctgtttgtt |
3702907 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 22 - 307
Target Start/End: Original strand, 3698931 - 3699216
Alignment:
| Q |
22 |
actttgtgcttgttgtgttttgcataacatttgtgagatgaaaggcgagaaaatggatcctgaacttatggttgatattgttgatgatgaaatggttcct |
121 |
Q |
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| T |
3698931 |
acttggtgcttgttgtgttttgcataacatttgtgagatgaaaggtgagaaaatggatcctgaacttatggttgatattgttgatgatgaaatggttcct |
3699030 |
T |
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| Q |
122 |
gaagttagtttgagatcagttaattcattgaaggctagagatgctattgctcataatcttttgcgtcatggtttagcaggcacnnnnnnnctttaaactt |
221 |
Q |
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| T |
3699031 |
gaagttagtttgagatcagttaattcattgaaggctagagatgctattgctcataatcttttgcatcatggtttagcaggcacttcttttctttaaactc |
3699130 |
T |
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| Q |
222 |
ataagattaagaactttgtgttatttgttgtattttgatcattgttatatgcatctctgagaacatgattttattttttgctgttt |
307 |
Q |
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| T |
3699131 |
ataagattaagaactttgtgtaatttgttgtattttgatcattgttttatgcatctctgagaacatgattttcttttttgctgttt |
3699216 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 27 - 62
Target Start/End: Complemental strand, 52262442 - 52262407
Alignment:
| Q |
27 |
gtgcttgttgtgttttgcataacatttgtgagatga |
62 |
Q |
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| T |
52262442 |
gtgcttgttgtgttttgcataatatttgtgagatga |
52262407 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 68 - 123
Target Start/End: Original strand, 39718869 - 39718924
Alignment:
| Q |
68 |
gagaaaatggatcctgaacttatggttgatattgttgatgatgaaatggttcctga |
123 |
Q |
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| T |
39718869 |
gagaaaatggatcctgaacttaagattgatgttttggatgatgaaatgcttcctga |
39718924 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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