View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9917A_low_96 (Length: 303)
Name: NF9917A_low_96
Description: NF9917A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9917A_low_96 |
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| [»] scaffold0028 (1 HSPs) |
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Alignment Details
Target: scaffold0028 (Bit Score: 272; Significance: 1e-152; HSPs: 1)
Name: scaffold0028
Description:
Target: scaffold0028; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 4 - 298
Target Start/End: Original strand, 110670 - 110962
Alignment:
| Q |
4 |
ttgtaagttttgaattattctccctttcaagtcatcgacttagaggtcagttacatgctatactgcttttgtgttgagaaactataagtgtatgctgaaa |
103 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
110670 |
ttgtaagttttgaattattctccctttcaagtcatcgacttagaggtcagttacatgctatactgcttttgtgttgagaaactataagtgtatgctgaaa |
110769 |
T |
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| Q |
104 |
tcggtttgtgtgattctatgatttctttattttgataatgacttaaccgagtgaggctttggatgtctttcaggcttcagcttacaggctaattttgaat |
203 |
Q |
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|||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
110770 |
tcggttggtgtgattctatgattt--ttattttgataatgacttaaccgagtgaggctttggatgtctttcaggcttcagcttacaggctaattttgaat |
110867 |
T |
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| Q |
204 |
gggtcaaaatgaatcataatttttctttctttataagtgaatgttttgtttaaaccaatgtcatcctggacttgaataattttgaagtacattat |
298 |
Q |
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||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
110868 |
gggtcaaaatgaatcataatttttcgttctttttaagtgaatgttttgtttaaaccaatgtcatcctggacttgaataattttgaagtacattat |
110962 |
T |
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