View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9917A_low_98 (Length: 302)
Name: NF9917A_low_98
Description: NF9917A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9917A_low_98 |
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Alignment Details
Target: chr8 (Bit Score: 222; Significance: 1e-122; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 55 - 284
Target Start/End: Original strand, 38936148 - 38936377
Alignment:
| Q |
55 |
gtgtcgtcgacgaaggaggggaggtcggagatatgtgaagcgccgtcgtgtgtggcggcgatagtgaacaaagtattgaaagtatccaccggagcgacgg |
154 |
Q |
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| T |
38936148 |
gtgtcgtcgacgaaggaggggaggtcggagatatgtgaagcgccgtcgtgtgtggtggcgatagtgaacaaagtattgaaagtatccaccgtagcgacgg |
38936247 |
T |
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| Q |
155 |
agcacgcggttacaatactatggagtgtgtgttatttatttcgtgatcaaaaggcgcaagaagctgttacgaaagcgaatggattaacgaagattttgct |
254 |
Q |
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| T |
38936248 |
agcacgcggttacaatactatggagtgtgtgttatttatttcgtgatcaaaaggcgcaagaagctgttacgaaagcgaatggattaacgaagattttgct |
38936347 |
T |
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| Q |
255 |
tctgatgcaaagtaattgttcgccacaagt |
284 |
Q |
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| T |
38936348 |
tctgatgcaaagtaattgttcgccacaagt |
38936377 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 45; Significance: 1e-16; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 148 - 284
Target Start/End: Original strand, 43741730 - 43741866
Alignment:
| Q |
148 |
gcgacggagcacgcggttacaatactatggagtgtgtgttatttatttcgtgatcaaaaggcgcaagaagctgttacgaaagcgaatggattaacgaaga |
247 |
Q |
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| T |
43741730 |
gcgacggagcacgcagtaacgacgctgtggagtgtttgttatctgtttcgcgatcaaaaagcacaagaagcggttacgatggcaaatggattaacgaaga |
43741829 |
T |
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| Q |
248 |
ttttgcttctgatgcaaagtaattgttcgccacaagt |
284 |
Q |
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| T |
43741830 |
tattgttgctaatacagagtaattgttctccacaagt |
43741866 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 52890661 - 52890624
Alignment:
| Q |
1 |
gacgtttgggagagcggatcaggatgaggctttagcag |
38 |
Q |
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| T |
52890661 |
gacgtttgggagagcggatcaggatgaggctttagcag |
52890624 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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