View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9917_high_14 (Length: 260)
Name: NF9917_high_14
Description: NF9917
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9917_high_14 |
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Alignment Details
Target: chr4 (Bit Score: 212; Significance: 1e-116; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 19 - 250
Target Start/End: Complemental strand, 26150595 - 26150364
Alignment:
| Q |
19 |
tcctcccctttcttatctaaattcaccaaatccttccaccacttagaagcatttgttggacaaaagtcctcccctccttccaacatcgcgcacactttcc |
118 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||| |||||||||| |
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| T |
26150595 |
tcctcccctttcttatctaaattcaccaaatccttccaccacttagaagcatttgttggacaaaagtcctcccctccctccaacttcgcacacactttcc |
26150496 |
T |
|
| Q |
119 |
tcccataccgttcctcaagcacctccttccaatgagcgttatccccgtacaataatctccaccgccacttcgctagcaagctcaagttcatcaaccacac |
218 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
26150495 |
tcccataccgttcctcaagcacctccttccaatgagcgttatccccgtacaataacctccaccgccacttagctagcaagctcaagttcatcaaccacac |
26150396 |
T |
|
| Q |
219 |
atccttaaccccaagacctccacactcctttg |
250 |
Q |
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|||||||||||||||||||||||||||||||| |
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| T |
26150395 |
atccttaaccccaagacctccacactcctttg |
26150364 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 50; Significance: 1e-19; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 31 - 236
Target Start/End: Complemental strand, 47327023 - 47326818
Alignment:
| Q |
31 |
ttatctaaattcaccaaatccttccaccacttagaagcatttgttggacaaaagtcctcccctccttccaacatcgcgcacactttcctcccataccgtt |
130 |
Q |
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||||||| |||||||||||||||||||||||| |||||||| ||| ||||| |||| |||||||| | | ||| || | ||||||||| | | |
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| T |
47327023 |
ttatctagattcaccaaatccttccaccacttggaagcattacgcatgcaatagtcccccccaccttccaatttagtgcaaacctccctcccatatctct |
47326924 |
T |
|
| Q |
131 |
cctcaagcacctccttccaatgagcgttatccccgtacaataatctccaccgccacttcgctagcaagctcaagttcatcaaccacacatccttaacccc |
230 |
Q |
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| T |
47326923 |
cctcaagcacctccttccaaagagcatcttcaccattcaacaacctccacctccacttggctaacaagctcaaattcatcaatctcacatcctttacccc |
47326824 |
T |
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| Q |
231 |
aagacc |
236 |
Q |
| |
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||||| |
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| T |
47326823 |
gagacc |
47326818 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 136 - 230
Target Start/End: Original strand, 43074708 - 43074802
Alignment:
| Q |
136 |
agcacctccttccaatgagcgttatccccgtacaataatctccaccgccacttcgctagcaagctcaagttcatcaaccacacatccttaacccc |
230 |
Q |
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||||||||||||||| |||| | || || | ||| || ||||||| |||||| |||| ||| |||||||||||||||| ||||||||| ||||| |
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| T |
43074708 |
agcacctccttccaaagagcctcctcaccattcaacaacctccacctccacttagctaacaaactcaagttcatcaacctcacatccttgacccc |
43074802 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 19 - 68
Target Start/End: Original strand, 43074591 - 43074640
Alignment:
| Q |
19 |
tcctcccctttcttatctaaattcaccaaatccttccaccacttagaagc |
68 |
Q |
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||||||||| | |||||||| ||||||||||||||||||||||| ||||| |
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| T |
43074591 |
tcctcccctcttttatctaagttcaccaaatccttccaccacttggaagc |
43074640 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 17 - 102
Target Start/End: Complemental strand, 38547463 - 38547378
Alignment:
| Q |
17 |
cttcctcccctttcttatctaaattcaccaaatccttccaccacttagaagcatttgttggacaaaagtcctcccctccttccaac |
102 |
Q |
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|||||||||| ||||||| |||||||||| ||||||||||||||| |||||| | | ||||||| |||||||||||||||||| |
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| T |
38547463 |
cttcctccccactcttatccaaattcaccacatccttccaccactttgaagcactactcggacaaatctcctcccctccttccaac |
38547378 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 140 - 236
Target Start/End: Complemental strand, 38907308 - 38907212
Alignment:
| Q |
140 |
cctccttccaatgagcgttatccccgtacaataatctccaccgccacttcgctagcaagctcaagttcatcaaccacacatccttaaccccaagacc |
236 |
Q |
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||||||||||| | || || |||||| | || || ||||||| |||||| || ||||| ||||||||||||||||| |||||| ||||||||||||| |
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| T |
38907308 |
cctccttccaaagggcattctccccgaataacaacctccacctccacttggcaagcaaactcaagttcatcaaccaaacatccctaaccccaagacc |
38907212 |
T |
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