View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9917_high_16 (Length: 255)

Name: NF9917_high_16
Description: NF9917
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9917_high_16
NF9917_high_16
[»] scaffold0014 (3 HSPs)
scaffold0014 (79-253)||(111876-112050)
scaffold0014 (79-138)||(106063-106122)
scaffold0014 (216-253)||(106130-106167)
[»] chr4 (28 HSPs)
chr4 (79-253)||(1913717-1913891)
chr4 (79-252)||(18890003-18890175)
chr4 (79-253)||(30679778-30679950)
chr4 (79-252)||(12659176-12659349)
chr4 (79-253)||(1873978-1874150)
chr4 (79-253)||(30673685-30673857)
chr4 (79-253)||(16325702-16325876)
chr4 (79-253)||(23187964-23188136)
chr4 (79-253)||(25687544-25687716)
chr4 (79-253)||(16334746-16334920)
chr4 (80-253)||(25697312-25697483)
chr4 (79-253)||(23200527-23200699)
chr4 (79-239)||(910847-911004)
chr4 (79-228)||(12435360-12435504)
chr4 (79-228)||(42404644-42404788)
chr4 (79-228)||(42411108-42411252)
chr4 (79-228)||(29333638-29333782)
chr4 (79-253)||(12428869-12429041)
chr4 (80-253)||(12439278-12439449)
chr4 (79-228)||(917302-917446)
chr4 (82-253)||(12665693-12665859)
chr4 (79-204)||(55325480-55325608)
chr4 (79-207)||(33360212-33360340)
chr4 (79-200)||(4393790-4393911)
chr4 (79-200)||(48305378-48305498)
chr4 (79-171)||(42119802-42119894)
chr4 (79-148)||(20192682-20192751)
chr4 (79-148)||(53982095-53982164)
[»] chr5 (12 HSPs)
chr5 (79-253)||(35264526-35264698)
chr5 (79-253)||(35270267-35270439)
chr5 (79-253)||(23058940-23059112)
chr5 (79-253)||(23053365-23053537)
chr5 (79-253)||(39653913-39654085)
chr5 (79-230)||(21171196-21171345)
chr5 (79-252)||(25365378-25365552)
chr5 (79-230)||(21178057-21178208)
chr5 (79-230)||(16675565-16675711)
chr5 (79-148)||(1536645-1536714)
chr5 (156-197)||(2135850-2135891)
chr5 (79-148)||(28375811-28375880)
[»] chr3 (23 HSPs)
chr3 (79-253)||(49486708-49486882)
chr3 (79-253)||(49491205-49491379)
chr3 (79-253)||(15752483-15752657)
chr3 (79-253)||(15758276-15758450)
chr3 (79-253)||(21473105-21473279)
chr3 (79-245)||(21453161-21453327)
chr3 (79-245)||(21458335-21458501)
chr3 (79-228)||(2982190-2982337)
chr3 (79-228)||(2978246-2978393)
chr3 (79-250)||(21877165-21877336)
chr3 (79-252)||(21883425-21883598)
chr3 (79-251)||(21477493-21477664)
chr3 (79-137)||(20454618-20454676)
chr3 (79-148)||(2168741-2168810)
chr3 (79-148)||(3110599-3110668)
chr3 (79-148)||(9730403-9730472)
chr3 (79-148)||(13985260-13985329)
chr3 (79-148)||(13990832-13990901)
chr3 (79-148)||(23344376-23344445)
chr3 (79-148)||(40800728-40800797)
chr3 (79-148)||(40802652-40802721)
chr3 (79-131)||(9724730-9724782)
chr3 (79-147)||(13992079-13992147)
[»] chr2 (17 HSPs)
chr2 (79-253)||(19437523-19437695)
chr2 (79-253)||(19443098-19443270)
chr2 (79-253)||(25445045-25445217)
chr2 (79-251)||(43287379-43287551)
chr2 (79-253)||(43293122-43293296)
chr2 (79-241)||(25454715-25454875)
chr2 (79-253)||(24053273-24053446)
chr2 (79-253)||(24056608-24056781)
chr2 (79-200)||(31437152-31437273)
chr2 (79-200)||(31433046-31433167)
chr2 (128-200)||(8872290-8872362)
chr2 (79-148)||(22424978-22425047)
chr2 (79-145)||(26694153-26694219)
chr2 (79-148)||(14893226-14893295)
chr2 (79-148)||(22430348-22430417)
chr2 (79-148)||(22435942-22436011)
chr2 (79-148)||(43776991-43777060)
[»] chr8 (12 HSPs)
chr8 (79-252)||(30714202-30714373)
chr8 (79-252)||(30721979-30722150)
chr8 (79-252)||(30727587-30727758)
chr8 (79-228)||(21241173-21241317)
chr8 (79-228)||(21247677-21247821)
chr8 (79-228)||(37204236-37204382)
chr8 (79-228)||(37209713-37209859)
chr8 (79-202)||(27679660-27679782)
chr8 (79-202)||(27683442-27683564)
chr8 (87-200)||(24042891-24043004)
chr8 (79-184)||(26196897-26197002)
chr8 (79-171)||(26196996-26197088)
[»] chr1 (19 HSPs)
chr1 (79-253)||(31092933-31093105)
chr1 (79-253)||(37365135-37365309)
chr1 (79-253)||(11654021-11654193)
chr1 (79-253)||(31099539-31099711)
chr1 (79-253)||(27347151-27347325)
chr1 (79-253)||(11660178-11660350)
chr1 (79-253)||(18540691-18540863)
chr1 (79-253)||(35625236-35625410)
chr1 (79-253)||(18534965-18535137)
chr1 (79-253)||(37356717-37356891)
chr1 (79-228)||(7876092-7876239)
chr1 (79-253)||(38736040-38736214)
chr1 (79-228)||(38984913-38985057)
chr1 (79-228)||(38991100-38991244)
chr1 (79-204)||(28519276-28519400)
chr1 (79-228)||(28512813-28512955)
chr1 (79-253)||(39492741-39492913)
chr1 (79-148)||(15716624-15716693)
chr1 (79-148)||(26711567-26711636)
[»] chr7 (15 HSPs)
chr7 (79-253)||(29176545-29176717)
chr7 (87-253)||(29185532-29185696)
chr7 (79-203)||(8242542-8242666)
chr7 (79-252)||(340278-340451)
chr7 (79-245)||(346519-346685)
chr7 (79-228)||(22822538-22822684)
chr7 (79-228)||(22826841-22826987)
chr7 (79-203)||(8248111-8248235)
chr7 (79-251)||(25830376-25830546)
chr7 (79-178)||(2068782-2068881)
chr7 (80-196)||(21989710-21989826)
chr7 (79-147)||(44655599-44655667)
chr7 (79-148)||(16648423-16648492)
chr7 (79-148)||(17622784-17622853)
chr7 (79-148)||(42167711-42167780)
[»] scaffold0102 (1 HSPs)
scaffold0102 (79-253)||(14026-14198)
[»] scaffold0079 (1 HSPs)
scaffold0079 (79-253)||(57940-58114)
[»] chr6 (4 HSPs)
chr6 (79-253)||(18738574-18738746)
chr6 (79-228)||(23427483-23427627)
chr6 (79-252)||(33660877-33661051)
chr6 (79-228)||(23421637-23421781)
[»] scaffold0591 (1 HSPs)
scaffold0591 (79-252)||(9324-9496)
[»] scaffold0258 (1 HSPs)
scaffold0258 (80-253)||(6264-6435)
[»] scaffold0004 (1 HSPs)
scaffold0004 (79-148)||(345761-345830)
[»] scaffold0211 (1 HSPs)
scaffold0211 (79-147)||(26904-26972)
[»] scaffold0169 (1 HSPs)
scaffold0169 (79-147)||(8696-8764)


Alignment Details
Target: scaffold0014 (Bit Score: 143; Significance: 3e-75; HSPs: 3)
Name: scaffold0014
Description:

Target: scaffold0014; HSP #1
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 79 - 253
Target Start/End: Original strand, 111876 - 112050
Alignment:
Q  79 gttataaatattaatagtggatgtccaaatagcaaatgtgttagtggatcatactattaggttattgggcttaattcataagctactctatttccctata 178  Q
    |||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  111876 gttataaatattaatagtggatgtccaaatagcaaatgtgttagtgggccatactattaggttattgggcttaattcataggctactctatttccctata 111975  T
Q  179 aatagagctcatttgtaacattgagatatacacattagtgaataagaatactgatcctattctctctgcttctcc 253  Q
    ||||||| |||||||||||||||||||| |||||| ||||||||||||||||| ||||||||||||| |||||||    
T  111976 aatagagttcatttgtaacattgagatacacacatcagtgaataagaatactgctcctattctctcttcttctcc 112050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0014; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 79 - 138
Target Start/End: Original strand, 106063 - 106122
Alignment:
Q  79 gttataaatattaatagtggatgtccaaatagcaaatgtgttagtggatcatactattag 138  Q
    |||||||||||||| || |||||||||||||||||||||||||||||   ||||||||||    
T  106063 gttataaatattaacagcggatgtccaaatagcaaatgtgttagtgggctatactattag 106122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0014; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 216 - 253
Target Start/End: Original strand, 106130 - 106167
Alignment:
Q  216 gtgaataagaatactgatcctattctctctgcttctcc 253  Q
    |||||||||||||||| ||||||||||||| |||||||    
T  106130 gtgaataagaatactgctcctattctctcttcttctcc 106167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 143; Significance: 3e-75; HSPs: 28)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 79 - 253
Target Start/End: Complemental strand, 1913891 - 1913717
Alignment:
Q  79 gttataaatattaatagtggatgtccaaatagcaaatgtgttagtggatcatactattaggttattgggcttaattcataagctactctatttccctata 178  Q
    |||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  1913891 gttataaatattaatagtggatgtccaaatagcaaatgtgttagtgggccatactattaggttattgggcttaattcataggctactctatttccctata 1913792  T
Q  179 aatagagctcatttgtaacattgagatatacacattagtgaataagaatactgatcctattctctctgcttctcc 253  Q
    |||||||||||||||||||||||||||| |||||| ||||||||||||||||| || |||||||||| |||||||    
T  1913791 aatagagctcatttgtaacattgagatacacacatcagtgaataagaatactgctcatattctctcttcttctcc 1913717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 79 - 252
Target Start/End: Original strand, 18890003 - 18890175
Alignment:
Q  79 gttataaatattaatagtggatgtccaaatagcaaatgtgttagtggatcatactattaggttattgggcttaattcataagctactctatttccctata 178  Q
    |||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18890003 gttataaatattaatagtggatgtccaaatagcaaatgtgttagtgggccatactattaggttattgggcttaattcataagctactctatttccctata 18890102  T
Q  179 aatagagctcatttgtaacattgagatatacacattagtgaataagaatactgatcc-tattctctctgcttctc 252  Q
    |||||| |||||||||||||||  |||||||||||||||||||||||||| |  ||| |||||||||| ||||||    
T  18890103 aatagaactcatttgtaacatt--gatatacacattagtgaataagaatatttctccttattctctcttcttctc 18890175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 79 - 253
Target Start/End: Complemental strand, 30679950 - 30679778
Alignment:
Q  79 gttataaatattaatagtggatgtccaaatagcaaatgtgttagtggatcatactattaggttattgggcttaattcataagctactctatttccctata 178  Q
    |||||||||||||||||||||||||||||||||||||||||||||||  ||||||| |||||||||||||||| ||||||||||||||||||||||||||    
T  30679950 gttataaatattaatagtggatgtccaaatagcaaatgtgttagtgggccatactactaggttattgggcttagttcataagctactctatttccctata 30679851  T
Q  179 aatagagctcatttgtaacattgagatatacacattagtgaataagaatactgatcctattctctctgcttctcc 253  Q
    ||||||||||||||||||||||  |||| | |||||||||||||||||||||| || |||||||||| |||||||    
T  30679850 aatagagctcatttgtaacatt--gataaatacattagtgaataagaatactgctcttattctctcttcttctcc 30679778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 79 - 252
Target Start/End: Complemental strand, 12659349 - 12659176
Alignment:
Q  79 gttataaatattaatagtggatgtccaaatagcaaatgtgttagtggatcatactattaggttattgggcttaattcataagctactctatttccctata 178  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||  ||||||| |||||||||||||||| ||||||||||||||||||| | ||||    
T  12659349 gttataaatattaatagtggatgtccaaatagcaaatgtgttattgggccatactactaggttattgggcttagttcataagctactctattttcttata 12659250  T
Q  179 aatagagctcatttgtaacattgagatatacacattagtgaataagaatactgatcctattctctctgcttctc 252  Q
    |||||||||||||||||||| ||||||| |||||||||||||||||||||||| || |||||||||| ||||||    
T  12659249 aatagagctcatttgtaacactgagatacacacattagtgaataagaatactgctcatattctctcttcttctc 12659176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 124; E-Value: 7e-64
Query Start/End: Original strand, 79 - 253
Target Start/End: Complemental strand, 1874150 - 1873978
Alignment:
Q  79 gttataaatattaatagtggatgtccaaatagcaaatgtgttagtggatcatactattaggttattgggcttaattcataagctactctatttccctata 178  Q
    |||||||||||||||||||||||||||||||||||||||||||||||  |||||||||| |||||||||||||||||||| |||||||||||||||||||    
T  1874150 gttataaatattaatagtggatgtccaaatagcaaatgtgttagtgggccatactattatgttattgggcttaattcataggctactctatttccctata 1874051  T
Q  179 aatagagctcatttgtaacattgagatatacacattagtgaataagaatactgatcctattctctctgcttctcc 253  Q
    |||| ||||||||||||||||||||  |||||||| ||||||||||||||||  ||||||||||||  |||||||    
T  1874050 aatatagctcatttgtaacattgag--atacacatcagtgaataagaatacttttcctattctctcctcttctcc 1873978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 124; E-Value: 7e-64
Query Start/End: Original strand, 79 - 253
Target Start/End: Complemental strand, 30673857 - 30673685
Alignment:
Q  79 gttataaatattaatagtggatgtccaaatagcaaatgtgttagtggatcatactattaggttattgggcttaattcataagctactctatttccctata 178  Q
    |||||||||||||||||||||||||||||||||||||||||||||||  ||||||| |||||||||||||||| ||||||||||||||||||||||||||    
T  30673857 gttataaatattaatagtggatgtccaaatagcaaatgtgttagtgggccatactactaggttattgggcttagttcataagctactctatttccctata 30673758  T
Q  179 aatagagctcatttgtaacattgagatatacacattagtgaataagaatactgatcctattctctctgcttctcc 253  Q
    ||||||| ||||||||||||||  |||| | |||||||||||||||||||||| || |||||||||| |||||||    
T  30673757 aatagagttcatttgtaacatt--gataaatacattagtgaataagaatactgctcttattctctctccttctcc 30673685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 79 - 253
Target Start/End: Complemental strand, 16325876 - 16325702
Alignment:
Q  79 gttataaatattaatagtggatgtccaaatagcaaatgtgttagtggatcatactattaggttattgggcttaattcataagctactctatttccctata 178  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||  ||||||| |||||||||||||||| ||||||||||||| ||||| | ||||    
T  16325876 gttataaatattaatagtggatgtccaaatagcaaatgtgttattgggccatactactaggttattgggcttagttcataagctactatattttcttata 16325777  T
Q  179 aatagagctcatttgtaacattgagatatacacattagtgaataagaatactgatcctattctctctgcttctcc 253  Q
    |||||||||||||||||||||||||||| |||||||| |||||||||||| || ||||||||||||| |||||||    
T  16325776 aatagagctcatttgtaacattgagatacacacattattgaataagaatattgttcctattctctcttcttctcc 16325702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 79 - 253
Target Start/End: Original strand, 23187964 - 23188136
Alignment:
Q  79 gttataaatattaatagtggatgtccaaatagcaaatgtgttagtggatcatactattaggttattgggcttaattcataagctactctatttccctata 178  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||| |||||| ||||| ||||||||||||||||||||||||||    
T  23187964 gttataaatattaatagtggatgtccaaatagcaaatgtgttagtggaccatactactagtttattgagcttagttcataagctactctatttccctata 23188063  T
Q  179 aatagagctcatttgtaacattgagatatacacattagtgaataagaatactgatcctattctctctgcttctcc 253  Q
    ||||||||||||||||||||||  |||| ||| || ||||||||||||||||| |||||||||| || |||||||    
T  23188064 aatagagctcatttgtaacatt--gatagacagataagtgaataagaatactgttcctattctcacttcttctcc 23188136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 79 - 253
Target Start/End: Complemental strand, 25687716 - 25687544
Alignment:
Q  79 gttataaatattaatagtggatgtccaaatagcaaatgtgttagtggatcatactattaggttattgggcttaattcataagctactctatttccctata 178  Q
    |||||||||||||||||||||||||||||||||||||||||||||||  ||||||| ||| |||||||||||||||||||||||||||||||||||||||    
T  25687716 gttataaatattaatagtggatgtccaaatagcaaatgtgttagtgggccatactactagtttattgggcttaattcataagctactctatttccctata 25687617  T
Q  179 aatagagctcatttgtaacattgagatatacacattagtgaataagaatactgatcctattctctctgcttctcc 253  Q
    || |||||||||||||||||||  |||||| | || ||||||||||||||||| ||||||| ||||| |||||||    
T  25687616 aacagagctcatttgtaacatt--gatatatagatcagtgaataagaatactgctcctattttctcttcttctcc 25687544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 119; E-Value: 7e-61
Query Start/End: Original strand, 79 - 253
Target Start/End: Complemental strand, 16334920 - 16334746
Alignment:
Q  79 gttataaatattaatagtggatgtccaaatagcaaatgtgttagtggatcatactattaggttattgggcttaattcataagctactctatttccctata 178  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||  ||||||| |||||||||||||||| ||||||||||||| ||||| | ||||    
T  16334920 gttataaatattaatagtggatgtccaaatagcaaatgtgttattgggccatactactaggttattgggcttagttcataagctactatattttcttata 16334821  T
Q  179 aatagagctcatttgtaacattgagatatacacattagtgaataagaatactgatcctattctctctgcttctcc 253  Q
    |||||||||||||||||||||||||||| |||||||| |||||||||||| || ||||||| ||||| |||||||    
T  16334820 aatagagctcatttgtaacattgagatacacacattattgaataagaatattgttcctattatctcttcttctcc 16334746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 80 - 253
Target Start/End: Complemental strand, 25697483 - 25697312
Alignment:
Q  80 ttataaatattaatagtggatgtccaaatagcaaatgtgttagtggatcatactattaggttattgggcttaattcataagctactctatttccctataa 179  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||  ||||||| ||| ||||||| ||||||||||||||||||||||||||||||||    
T  25697483 ttataaatattaatagtggatatccaaatagcaaatgtgttagtgggccatactactagtttattggacttaattcataagctactctatttccctataa 25697384  T
Q  180 atagagctcatttgtaacattgagatatacacattagtgaataagaatactgatcctattctctctgcttctcc 253  Q
    |||||||||||||||||||||  |||||| | || ||||||||||||||||| ||||||| ||||| |||||||    
T  25697383 atagagctcatttgtaacatt--gatatatagatcagtgaataagaatactgctcctattttctcttcttctcc 25697312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 79 - 253
Target Start/End: Original strand, 23200527 - 23200699
Alignment:
Q  79 gttataaatattaatagtggatgtccaaatagcaaatgtgttagtggatcatactattaggttattgggcttaattcataagctactctatttccctata 178  Q
    |||||||||||||||||||||||||||||||||||||||||||||||  ||||||| ||| |||||||||||| |||||||| ||||||| |||||||||    
T  23200527 gttataaatattaatagtggatgtccaaatagcaaatgtgttagtgggccatactactagtttattgggcttagttcataagttactctacttccctata 23200626  T
Q  179 aatagagctcatttgtaacattgagatatacacattagtgaataagaatactgatcctattctctctgcttctcc 253  Q
    |||||| |||||||||||||||  |||| ||| || || ||||| |||||||| ||||||||||||| |||||||    
T  23200627 aatagaactcatttgtaacatt--gatagacagatcagcgaatacgaatactgttcctattctctcttcttctcc 23200699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 79 - 239
Target Start/End: Complemental strand, 911004 - 910847
Alignment:
Q  79 gttataaatattaatagtggatgtccaaatagcaaatgtgttagtggatcatactattaggttattgggcttaattcataagctactctatttccctata 178  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||  ||||||| |||||| ||||||||| ||||||||||||||||||| ||||||    
T  911004 gttataaatattaatattggatgtccaaatagcaaatgtgttagtgggccatactactaggtt-ttgggcttagttcataagctactctattttcctata 910906  T
Q  179 aatagagctcatttgtaacattgagatatacacattagtgaataagaatactgatcctatt 239  Q
    ||||||||||||||||||||||  |||| ||| || ||||||||||||||||| |||||||    
T  910905 aatagagctcatttgtaacatt--gatacacagatcagtgaataagaatactgctcctatt 910847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 79 - 228
Target Start/End: Complemental strand, 12435504 - 12435360
Alignment:
Q  79 gttataaatattaatagtggatgtccaaatagcaaatgtgttagtggatcatactattaggttattgggcttaattcataagctactctatttccctata 178  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||  ||||||| |||||| ||||||||| ||||||||||||||||||||||||||    
T  12435504 gttataaatattaatattggatgtccaaatagcaaatgtgttagtgggccatactactaggtt-ttgggcttagttcataagctactctatttccctata 12435406  T
Q  179 aatagagctcatttgtaacattgagatatacacattagtgaataagaata 228  Q
    |||||||||||||||||||||||    ||||||| |||||||||||||||    
T  12435405 aatagagctcatttgtaacattg----atacacactagtgaataagaata 12435360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 79 - 228
Target Start/End: Original strand, 42404644 - 42404788
Alignment:
Q  79 gttataaatattaatagtggatgtccaaatagcaaatgtgttagtggatcatactattaggttattgggcttaattcataagctactctatttccctata 178  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||  ||||||| |||||| ||||||||| ||||||||||||||||||||||||||    
T  42404644 gttataaatattaatattggatgtccaaatagcaaatgtgttagtgggccatactactaggtt-ttgggcttagttcataagctactctatttccctata 42404742  T
Q  179 aatagagctcatttgtaacattgagatatacacattagtgaataagaata 228  Q
    |||||||||||||||||||||||    ||||||| |||||||||||||||    
T  42404743 aatagagctcatttgtaacattg----atacacactagtgaataagaata 42404788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 79 - 228
Target Start/End: Original strand, 42411108 - 42411252
Alignment:
Q  79 gttataaatattaatagtggatgtccaaatagcaaatgtgttagtggatcatactattaggttattgggcttaattcataagctactctatttccctata 178  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||  ||||||| |||||| ||||||||| ||||||||||||||||||||||||||    
T  42411108 gttataaatattaatattggatgtccaaatagcaaatgtgttagtgggccatactactaggtt-ttgggcttagttcataagctactctatttccctata 42411206  T
Q  179 aatagagctcatttgtaacattgagatatacacattagtgaataagaata 228  Q
    |||||||||||||||||||||||    ||||| | |||||||||||||||    
T  42411207 aatagagctcatttgtaacattg----atacaaactagtgaataagaata 42411252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 79 - 228
Target Start/End: Original strand, 29333638 - 29333782
Alignment:
Q  79 gttataaatattaatagtggatgtccaaatagcaaatgtgttagtggatcatactattaggttattgggcttaattcataagctactctatttccctata 178  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||  ||||||| |||||| ||||||||| ||||||| ||||||||||||||||||    
T  29333638 gttataaatattaatattggatgtccaaatagcaaatgtgttagtgggccatactactaggtt-ttgggcttagttcataacctactctatttccctata 29333736  T
Q  179 aatagagctcatttgtaacattgagatatacacattagtgaataagaata 228  Q
    |||| ||||||||||||||||||    ||||||| |||||||||||||||    
T  29333737 aataaagctcatttgtaacattg----atacacactagtgaataagaata 29333782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 79 - 253
Target Start/End: Complemental strand, 12429041 - 12428869
Alignment:
Q  79 gttataaatattaatagtggatgtccaaatagcaaatgtgttagtggatcatactattaggttattgggcttaattcataagctactctatttccctata 178  Q
    ||||||||||||||||||||||||||||| |||||||  |||  |||  ||||||| |||||||||||||||| ||||||||||||||||||||||||||    
T  12429041 gttataaatattaatagtggatgtccaaagagcaaataggtttatgggccatactaataggttattgggcttagttcataagctactctatttccctata 12428942  T
Q  179 aatagagctcatttgtaacattgagatatacacattagtgaataagaatactgatcctattctctctgcttctcc 253  Q
    |||||| ||||||||||||| ||||    | | ||  |||||||||||||||| ||||||||||||| |||||||    
T  12428941 aatagaactcatttgtaacagtgag--tgagagatccgtgaataagaatactgctcctattctctcttcttctcc 12428869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 80 - 253
Target Start/End: Complemental strand, 12439449 - 12439278
Alignment:
Q  80 ttataaatattaatagtggatgtccaaatagcaaatgtgttagtggatcatactattaggttattgggcttaattcataagctactctatttccctataa 179  Q
    ||||||||||||||||||||||||||||||||||||  |||  |||  ||||||| |||||||||||||||| |||||||||||||||||||||||||||    
T  12439449 ttataaatattaatagtggatgtccaaatagcaaataggtttatgggccatactaataggttattgggcttagttcataagctactctatttccctataa 12439350  T
Q  180 atagagctcatttgtaacattgagatatacacattagtgaataagaatactgatcctattctctctgcttctcc 253  Q
    ||||| ||||||||||||| ||||    | | ||  |||||||||||||||| || |||||||||| |||||||    
T  12439349 atagaactcatttgtaacagtgag--tgagagatcggtgaataagaatactgctcatattctctcttcttctcc 12439278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 79 - 228
Target Start/End: Complemental strand, 917446 - 917302
Alignment:
Q  79 gttataaatattaatagtggatgtccaaatagcaaatgtgttagtggatcatactattaggttattgggcttaattcataagctactctatttccctata 178  Q
    |||||||||||||||| |||||||| ||||||||||| |||||||||   |||||| |||||| | ||||||| ||||||||||||||||||||||||||    
T  917446 gttataaatattaatattggatgtctaaatagcaaatatgttagtgggctatactactaggtt-tcgggcttagttcataagctactctatttccctata 917348  T
Q  179 aatagagctcatttgtaacattgagatatacacattagtgaataagaata 228  Q
    |||||||||||||||||||||||    ||||||| |||||||||| ||||    
T  917347 aatagagctcatttgtaacattg----atacacactagtgaataaaaata 917302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 82 - 253
Target Start/End: Complemental strand, 12665859 - 12665693
Alignment:
Q  82 ataaatattaatagtggatgt---ccaaatagcaaatgtgttagtggatcatactattaggttattgggcttaattcataagctactctatttccctata 178  Q
    |||||||||||||||||||||   |||||||  |||||||||| |||  ||||||| ||||||||||| |||| ||||||||||||||||||| | ||||    
T  12665859 ataaatattaatagtggatgttgtccaaataataaatgtgttattgggccatactactaggttattgg-cttagttcataagctactctattttcttata 12665761  T
Q  179 aatagagctcatttgtaacattgagatatacacattagtgaataagaatactgatcctattctctctgcttctcc 253  Q
    ||||||||||||||||       ||||| |||||||||||||||||||||||| ||||||||||||| |||||||    
T  12665760 aatagagctcatttgt-------agatacacacattagtgaataagaatactgctcctattctctcttcttctcc 12665693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 79 - 204
Target Start/End: Original strand, 55325480 - 55325608
Alignment:
Q  79 gttataaatattaatagtggatgtccaaatagcaaatgtgttagtggatcata---ctattaggttattgggcttaattcataagctactctatttccct 175  Q
    |||||||||||||||| | |||||||||||||||||||||||||||| |||||   ||||||||||||||  |||| ||||||| ||||| |||||||||    
T  55325480 gttataaatattaataatagatgtccaaatagcaaatgtgttagtgggtcataatactattaggttattgaacttagttcataaactactttatttccct 55325579  T
Q  176 ataaatagagctcatttgtaacattgaga 204  Q
    ||||||| ||||||||||| |||||||||    
T  55325580 ataaataaagctcatttgttacattgaga 55325608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 79 - 207
Target Start/End: Complemental strand, 33360340 - 33360212
Alignment:
Q  79 gttataaatattaatagtggatgtccaaatagcaaatgtgttagtggatcatactattaggttattgggcttaattcataagctactctatttccctata 178  Q
    |||||||||||||| |||| |||| |||||||||||||||||||| ||  ||||||||| ||||||| | ||| || |||||||||||||||| | ||||    
T  33360340 gttataaatattaagagtgaatgtacaaatagcaaatgtgttagttgactatactattaagttattgagtttagtttataagctactctattttcttata 33360241  T
Q  179 aatagagctcatttgtaacattgagatat 207  Q
    ||||||||||||| |||||||||||||||    
T  33360240 aatagagctcattcgtaacattgagatat 33360212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 79 - 200
Target Start/End: Complemental strand, 4393911 - 4393790
Alignment:
Q  79 gttataaatattaatagtggatgtccaaatagcaaatgtgttagtggatcatactattaggttattgggcttaattcataagctactctatttccctata 178  Q
    ||||||||||||||||||||||||| ||||| |||||| ||||  |  |||||||| ||| ||||| || ||||||||||||||||| ||||||||||||    
T  4393911 gttataaatattaatagtggatgtctaaataacaaatgggttaacgagtcatactactagattattaggtttaattcataagctactttatttccctata 4393812  T
Q  179 aatagagctcatttgtaacatt 200  Q
    |||| |||||||||||||||||    
T  4393811 aataaagctcatttgtaacatt 4393790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 79 - 200
Target Start/End: Complemental strand, 48305498 - 48305378
Alignment:
Q  79 gttataaatattaatagtggatgtccaaatagcaaatgtgttagtggatcatactattaggttattgggcttaattcataagctactctatttccctata 178  Q
    |||||||||||||| ||||||||||||||||||||| | |||| |||  ||||| | ||| |||||| ||||| || ||| |||||||||||||||||||    
T  48305498 gttataaatattaaaagtggatgtccaaatagcaaacgcgttaatgggccataccactagattattgagcttagtttatatgctactctatttccctata 48305399  T
Q  179 aatagagctcatttgtaacatt 200  Q
    ||||||| ||| ||||||||||    
T  48305398 aatagagttca-ttgtaacatt 48305378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 79 - 171
Target Start/End: Complemental strand, 42119894 - 42119802
Alignment:
Q  79 gttataaatattaatagtggatgtccaaatagcaaatgtgttagtggatcatactattaggttattgggcttaattcataagctactctattt 171  Q
    ||||||||||||||||||||||||||||||||||||||  ||| ||| |||||||| ||| |||||| ||||||| ||||| ||||| |||||    
T  42119894 gttataaatattaatagtggatgtccaaatagcaaatggattaatgggtcatactactagattattgagcttaatccataaactactttattt 42119802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 79 - 148
Target Start/End: Complemental strand, 20192751 - 20192682
Alignment:
Q  79 gttataaatattaatagtggatgtccaaatagcaaatgtgttagtggatcatactattaggttattgggc 148  Q
    ||||| |||||||  |||||||||||| ||||||| || |||| ||||||||| | |||| |||||||||    
T  20192751 gttatgaatattacaagtggatgtccatatagcaattgggttattggatcatattgttagcttattgggc 20192682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 79 - 148
Target Start/End: Original strand, 53982095 - 53982164
Alignment:
Q  79 gttataaatattaatagtggatgtccaaatagcaaatgtgttagtggatcatactattaggttattgggc 148  Q
    ||||| |||||||  |||||||||||| ||||||| || |||| | ||||||||| |||| |||||||||    
T  53982095 gttatgaatattacaagtggatgtccatatagcaattgggttatttgatcatactgttagcttattgggc 53982164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 140; Significance: 2e-73; HSPs: 12)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 79 - 253
Target Start/End: Complemental strand, 35264698 - 35264526
Alignment:
Q  79 gttataaatattaatagtggatgtccaaatagcaaatgtgttagtggatcatactattaggttattgggcttaattcataagctactctatttccctata 178  Q
    |||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  35264698 gttataaatattaatagtggatgtccaaatagcaaatgtgttagtgggccatactattaggttattgggcttaattcataggctactctatttccctata 35264599  T
Q  179 aatagagctcatttgtaacattgagatatacacattagtgaataagaatactgatcctattctctctgcttctcc 253  Q
    |||||||||||||||||||||||||  |||||||| ||||||||||||||||| ||||||||||||| |||||||    
T  35264598 aatagagctcatttgtaacattgag--atacacatcagtgaataagaatactgctcctattctctcttcttctcc 35264526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 79 - 253
Target Start/End: Complemental strand, 35270439 - 35270267
Alignment:
Q  79 gttataaatattaatagtggatgtccaaatagcaaatgtgttagtggatcatactattaggttattgggcttaattcataagctactctatttccctata 178  Q
    |||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  35270439 gttataaatattaatagtggatgtccaaatagcaaatgtgttagtgggccatactattaggttattgggcttaattcataggctactctatttccctata 35270340  T
Q  179 aatagagctcatttgtaacattgagatatacacattagtgaataagaatactgatcctattctctctgcttctcc 253  Q
    |||||||||||||||||||||||||  |||||||| ||||||||||||||||| ||||||||||||| |||||||    
T  35270339 aatagagctcatttgtaacattgag--atacacatcagtgaataagaatactgctcctattctctcttcttctcc 35270267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 136; E-Value: 5e-71
Query Start/End: Original strand, 79 - 253
Target Start/End: Complemental strand, 23059112 - 23058940
Alignment:
Q  79 gttataaatattaatagtggatgtccaaatagcaaatgtgttagtggatcatactattaggttattgggcttaattcataagctactctatttccctata 178  Q
    |||||||||||||||||||||||||||||||||||||||||||||||  ||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  23059112 gttataaatattaatagtggatgtccaaatagcaaatgtgttagtgggccatactactaggttattgggcttaattcataagctactctatttccctata 23059013  T
Q  179 aatagagctcatttgtaacattgagatatacacattagtgaataagaatactgatcctattctctctgcttctcc 253  Q
    |||||||||||||||||||||||||  | |||||||||||||||||||||||| || |||||||||| |||||||    
T  23059012 aatagagctcatttgtaacattgag--acacacattagtgaataagaatactgctcttattctctcttcttctcc 23058940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 79 - 253
Target Start/End: Complemental strand, 23053537 - 23053365
Alignment:
Q  79 gttataaatattaatagtggatgtccaaatagcaaatgtgttagtggatcatactattaggttattgggcttaattcataagctactctatttccctata 178  Q
    |||||||||||||||||||||||||||||||||||||||||||||||  ||||||| |||||||||| ||||||||||||||||||||||||||||||||    
T  23053537 gttataaatattaatagtggatgtccaaatagcaaatgtgttagtgggccatactactaggttattgagcttaattcataagctactctatttccctata 23053438  T
Q  179 aatagagctcatttgtaacattgagatatacacattagtgaataagaatactgatcctattctctctgcttctcc 253  Q
    |||||||||||||||||||||||||  | |||||||||||||||||||||||| || |||||||||| |||||||    
T  23053437 aatagagctcatttgtaacattgag--acacacattagtgaataagaatactgctcttattctctcttcttctcc 23053365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 124; E-Value: 7e-64
Query Start/End: Original strand, 79 - 253
Target Start/End: Complemental strand, 39654085 - 39653913
Alignment:
Q  79 gttataaatattaatagtggatgtccaaatagcaaatgtgttagtggatcatactattaggttattgggcttaattcataagctactctatttccctata 178  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||| ||||||| |||||||||||||||||||||||||||||| ||||||| ||||    
T  39654085 gttataaatattaatagtggatgtccaaataacaaatgtgttagtggaccatactactaggttattgggcttaattcataagctactatatttccttata 39653986  T
Q  179 aatagagctcatttgtaacattgagatatacacattagtgaataagaatactgatcctattctctctgcttctcc 253  Q
    |||||||||||||| |||||||  ||||||||||| ||||||||||||||||| || |||||||||| |||||||    
T  39653985 aatagagctcatttataacatt--gatatacacatcagtgaataagaatactgctcttattctctcttcttctcc 39653913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 79 - 230
Target Start/End: Complemental strand, 21171345 - 21171196
Alignment:
Q  79 gttataaatattaatagtggatgtccaaatagcaaatgtgttagtggatcatactattaggttattgggcttaattcataagctactctatttccctata 178  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||  ||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  21171345 gttataaatattaatagtggatgtccaaatggcaaatgtgttagtgggccatactactaggttattgggcttaattcataagctactctatttccctata 21171246  T
Q  179 aatagagctcatttgtaacattgagatatacacattagtgaataagaatact 230  Q
    |||||||||||||||||||||||||  |||||||| ||||||||||||||||    
T  21171245 aatagagctcatttgtaacattgag--atacacataagtgaataagaatact 21171196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 79 - 252
Target Start/End: Complemental strand, 25365552 - 25365378
Alignment:
Q  79 gttataaatattaatagtggatgtccaaatagcaaatgtgttagtggatcatactattaggttattgggcttaattcataagctactctatttccctata 178  Q
    |||||||||||||||||||||||| |||||||||||||||||| |||  ||||||| |||||||||||||||| ||||||||||||||||||| ||||||    
T  25365552 gttataaatattaatagtggatgttcaaatagcaaatgtgttattgggccatactactaggttattgggcttagttcataagctactctattttcctata 25365453  T
Q  179 aatagagctcatttgtaacattgagatatacacattagtgaataagaatactgatcc-tattctctctgcttctc 252  Q
    |||||||||||||||||||||||  | | ||||||||||||||||||||| |  ||| |||||||||| ||||||    
T  25365452 aatagagctcatttgtaacattgtaaaacacacattagtgaataagaatatttctccttattctctcttcttctc 25365378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 79 - 230
Target Start/End: Complemental strand, 21178208 - 21178057
Alignment:
Q  79 gttataaatattaatagtggatgtccaaatagcaaatgtgttagtggatcatactattaggttattgggcttaattcataagctactc--tatttcccta 176  Q
    |||||||||||||||||||||||| ||||| ||||||||||||||||  ||||||| |||||||||||||||||||||||||||||||  ||||| ||||    
T  21178208 gttataaatattaatagtggatgttcaaatggcaaatgtgttagtgggccatactactaggttattgggcttaattcataagctactctatattttccta 21178109  T
Q  177 taaatagagctcatttgtaacattgagatatacacattagtgaataagaatact 230  Q
    |||||||||||||||||||||||||||  |||||||| ||||||||||||||||    
T  21178108 taaatagagctcatttgtaacattgag--atacacataagtgaataagaatact 21178057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 79 - 230
Target Start/End: Original strand, 16675565 - 16675711
Alignment:
Q  79 gttataaatattaatagtggatgtccaaatagcaaatgtgttagtggatcatactattaggttattgggcttaattcataagctactctatttccctata 178  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||  ||||||| ||||||   ||||||||||||||||||||| ||||||||||||    
T  16675565 gttataaatattaatagtgaatgtccaaatagcaaatgtgttagtgggccatactactaggtt---gggcttaattcataagctactatatttccctata 16675661  T
Q  179 aatagagctcatttgtaacattgagatatacacattagtgaataagaatact 230  Q
    |||||||||||||||||||||||||  |||||||| ||||||||||||||||    
T  16675662 aatagagctcatttgtaacattgag--atacacataagtgaataagaatact 16675711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 79 - 148
Target Start/End: Complemental strand, 1536714 - 1536645
Alignment:
Q  79 gttataaatattaatagtggatgtccaaatagcaaatgtgttagtggatcatactattaggttattgggc 148  Q
    |||||||||||||  |||||||||||| ||||||| || |||| ||||||||||| |||| |||||||||    
T  1536714 gttataaatattataagtggatgtccatatagcaattgggttattggatcatactgttagcttattgggc 1536645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 156 - 197
Target Start/End: Complemental strand, 2135891 - 2135850
Alignment:
Q  156 ataagctactctatttccctataaatagagctcatttgtaac 197  Q
    ||||| || ||||||||| |||||||||||||||||||||||    
T  2135891 ataagttaatctatttccatataaatagagctcatttgtaac 2135850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 79 - 148
Target Start/End: Complemental strand, 28375880 - 28375811
Alignment:
Q  79 gttataaatattaatagtggatgtccaaatagcaaatgtgttagtggatcatactattaggttattgggc 148  Q
    ||||| |||||||  |||||||||||| ||||||| || |||| ||||||||| | |||| |||||||||    
T  28375880 gttatgaatattacaagtggatgtccatatagcaattgagttattggatcatattgttagcttattgggc 28375811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 139; Significance: 8e-73; HSPs: 23)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 139; E-Value: 8e-73
Query Start/End: Original strand, 79 - 253
Target Start/End: Complemental strand, 49486882 - 49486708
Alignment:
Q  79 gttataaatattaatagtggatgtccaaatagcaaatgtgttagtggatcatactattaggttattgggcttaattcataagctactctatttccctata 178  Q
    |||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||| |||||||||||| ||||||||||||| |||||    
T  49486882 gttataaatattaatagtggatgtccaaatagcaaatgtgttagtgggccatactattaggttattgagcttaattcataggctactctatttctctata 49486783  T
Q  179 aatagagctcatttgtaacattgagatatacacattagtgaataagaatactgatcctattctctctgcttctcc 253  Q
    |||||||||||||||||||||||||||| |||||| ||||||||||||||||| ||||||||||||| |||||||    
T  49486782 aatagagctcatttgtaacattgagatacacacatcagtgaataagaatactgctcctattctctcttcttctcc 49486708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 79 - 253
Target Start/End: Complemental strand, 49491379 - 49491205
Alignment:
Q  79 gttataaatattaatagtggatgtccaaatagcaaatgtgttagtggatcatactattaggttattgggcttaattcataagctactctatttccctata 178  Q
    |||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||| |||||||||||| ||||||||||||| |||||    
T  49491379 gttataaatattaatagtggatgtccaaatagcaaatgtgttagtgggccatactattaggttattgagcttaattcataggctactctatttctctata 49491280  T
Q  179 aatagagctcatttgtaacattgagatatacacattagtgaataagaatactgatcctattctctctgcttctcc 253  Q
    |||||||||||||||||||||||||||| |||||| ||||||||||||||||| || |||||||||| |||||||    
T  49491279 aatagagctcatttgtaacattgagatacacacatcagtgaataagaatactgctcatattctctcttcttctcc 49491205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 79 - 253
Target Start/End: Complemental strand, 15752657 - 15752483
Alignment:
Q  79 gttataaatattaatagtggatgtccaaatagcaaatgtgttagtggatcatactattaggttattgggcttaattcataagctactctatttccctata 178  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||  ||||||| |||||||||||||||| ||||||||||||||||||| | ||||    
T  15752657 gttataaatattaatagtggatgtccaaatagcaaatgtgttattgggccatactactaggttattgggcttagttcataagctactctattttcttata 15752558  T
Q  179 aatagagctcatttgtaacattgagatatacacattagtgaataagaatactgatcctattctctctgcttctcc 253  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||| ||  ||||||||| |||||||    
T  15752557 aatagagctcatttgtaacattgagatacacacattagtgaataagaatactgctctaattctctcttcttctcc 15752483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 79 - 253
Target Start/End: Complemental strand, 15758450 - 15758276
Alignment:
Q  79 gttataaatattaatagtggatgtccaaatagcaaatgtgttagtggatcatactattaggttattgggcttaattcataagctactctatttccctata 178  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||  ||||||| |||||||||||||||| ||||||||||||||||||| | ||||    
T  15758450 gttataaatattaatagtggatgtccaaatagcaaatgtgttattgggccatactactaggttattgggcttagttcataagctactctattttcttata 15758351  T
Q  179 aatagagctcatttgtaacattgagatatacacattagtgaataagaatactgatcctattctctctgcttctcc 253  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||| ||  ||||||||| |||||||    
T  15758350 aatagagctcatttgtaacattgagatacacacattagtgaataagaatactgctctaattctctcttcttctcc 15758276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 79 - 253
Target Start/End: Original strand, 21473105 - 21473279
Alignment:
Q  79 gttataaatattaatagtggatgtccaaatagcaaatgtgttagtggatcatactattaggttattgggcttaattcataagctactctatttccctata 178  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||  ||||||||||| ||||||| |||| ||||||||||||||||||| | ||||    
T  21473105 gttataaatattaatagtggatgtccaaatagcaaatgtgttattgggccatactattagcttattggacttagttcataagctactctattttcttata 21473204  T
Q  179 aatagagctcatttgtaacattgagatatacacattagtgaataagaatactgatcctattctctctgcttctcc 253  Q
    |||||||||||||||||||||||||||| |||||| ||||||||||||||||| ||||||||||||| |||||||    
T  21473205 aatagagctcatttgtaacattgagatacacacatcagtgaataagaatactgctcctattctctcttcttctcc 21473279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 79 - 245
Target Start/End: Original strand, 21453161 - 21453327
Alignment:
Q  79 gttataaatattaatagtggatgtccaaatagcaaatgtgttagtggatcatactattaggttattgggcttaattcataagctactctatttccctata 178  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||  ||||||| |||||||||||||||| ||||||||||||||||||| | ||||    
T  21453161 gttataaatattaatagtggatgtccaaatagcaaatgtgttattgggccatactactaggttattgggcttagttcataagctactctattttcttata 21453260  T
Q  179 aatagagctcatttgtaacattgagatatacacattagtgaataagaatactgatcctattctctct 245  Q
    ||||||||||||||||||||||| |||| |||||| ||||||||||||||||| |||||||||||||    
T  21453261 aatagagctcatttgtaacattgggatacacacatcagtgaataagaatactgctcctattctctct 21453327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 79 - 245
Target Start/End: Original strand, 21458335 - 21458501
Alignment:
Q  79 gttataaatattaatagtggatgtccaaatagcaaatgtgttagtggatcatactattaggttattgggcttaattcataagctactctatttccctata 178  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||  ||||||| |||||||||||||||| ||||||||||||||||||| | ||||    
T  21458335 gttataaatattaatagtggatgtccaaatagcaaatgtgttattgggccatactactaggttattgggcttagttcataagctactctattttcttata 21458434  T
Q  179 aatagagctcatttgtaacattgagatatacacattagtgaataagaatactgatcctattctctct 245  Q
    ||||||||||||||||||||||| |||| |||||| ||||||||||||||||| |||||||||||||    
T  21458435 aatagagctcatttgtaacattgggatacacacatcagtgaataagaatactgctcctattctctct 21458501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 79 - 228
Target Start/End: Complemental strand, 2982337 - 2982190
Alignment:
Q  79 gttataaatattaatagtggatgtccaaatagcaaatgtgttagtggatcatactattaggttattgggcttaattcataagctactctatttccctata 178  Q
    |||||||||||||||||||||||||||||||||||||||||||||||   |||||| |||||||||||||||| ||||||||||||||||||||||||||    
T  2982337 gttataaatattaatagtggatgtccaaatagcaaatgtgttagtgggctatactactaggttattgggcttagttcataagctactctatttccctata 2982238  T
Q  179 aatagagctcatttgtaacattgagatatacacattagtgaataagaata 228  Q
    ||||||||||||||||||||||  ||||||||||| ||||||||||||||    
T  2982237 aatagagctcatttgtaacatt--gatatacacataagtgaataagaata 2982190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 79 - 228
Target Start/End: Complemental strand, 2978393 - 2978246
Alignment:
Q  79 gttataaatattaatagtggatgtccaaatagcaaatgtgttagtggatcatactattaggttattgggcttaattcataagctactctatttccctata 178  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||  ||||||| |||||||||||||||| ||||||||||||||||||| ||||||    
T  2978393 gttataaatattaatagtggatgtccaaataacaaatgtgttagtgggccatactactaggttattgggcttagttcataagctactctattttcctata 2978294  T
Q  179 aatagagctcatttgtaacattgagatatacacattagtgaataagaata 228  Q
    ||||||||||||||||||||||  ||||||||||| ||||||||||||||    
T  2978293 aatagagctcatttgtaacatt--gatatacacatcagtgaataagaata 2978246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 79 - 250
Target Start/End: Original strand, 21877165 - 21877336
Alignment:
Q  79 gttataaatattaatagtggatgtccaaatagcaaatgtgttagtggatcatactattaggttattgggcttaattcataagctactctatttccctata 178  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||  ||||||| |||||||||||||||| ||||||||||||||||||| | ||||    
T  21877165 gttataaatattaatagtggatgtccaaatagcaaatgtgttattgggccatactactaggttattgggcttagttcataagctactctattttcttata 21877264  T
Q  179 aatagagctcatttgtaacattgagatatacacattagtgaataagaatactgatcctattctctctgcttc 250  Q
    ||| ||||||||||||||||||| |||| |||||| |||||||| ||||| |  ||||||||||||| ||||    
T  21877265 aatggagctcatttgtaacattgggatacacacatcagtgaataggaatatttctcctattctctcttcttc 21877336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 79 - 252
Target Start/End: Original strand, 21883425 - 21883598
Alignment:
Q  79 gttataaatattaatagtggatgtccaaatagcaaatgtgttagtggatcatactattaggttattgggcttaattcataagctactctatttccctata 178  Q
    ||||||||||||||||| ||||||||||||||||||||||||| ||   ||||||| |||||||||||||||| ||||||||||||||||||| | ||||    
T  21883425 gttataaatattaatagcggatgtccaaatagcaaatgtgttattgagccatactactaggttattgggcttagttcataagctactctattttcttata 21883524  T
Q  179 aatagagctcatttgtaacattgagatatacacattagtgaataagaatactgatcctattctctctgcttctc 252  Q
    ||||||||||||||||||||||| |||| |||||| |||||||| ||||| |  ||||||||||||| ||||||    
T  21883525 aatagagctcatttgtaacattgggatacacacatcagtgaataggaatatttctcctattctctcttcttctc 21883598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 79 - 251
Target Start/End: Original strand, 21477493 - 21477664
Alignment:
Q  79 gttataaatattaatagtggatgtccaaatagcaaatgtgttagtggatcatactattaggttattgggcttaattcataagctactctatttccctata 178  Q
    ||||||||||||||||||||||||||||||||||| ||||||| |||  ||||||| |||||||||||||||| ||||||||||||| |||||   ||||    
T  21477493 gttataaatattaatagtggatgtccaaatagcaa-tgtgttattgggccatactactaggttattgggcttagttcataagctactttatttttttata 21477591  T
Q  179 aatagagctcatttgtaacattgagatatacacattagtgaataagaatactgatcctattctctctgcttct 251  Q
    ||||| |||||||||||||||||||||| ||||||  || ||||||||||||| ||||||||||||| |||||    
T  21477592 aatagggctcatttgtaacattgagatacacacatcggtaaataagaatactgctcctattctctcttcttct 21477664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 79 - 137
Target Start/End: Original strand, 20454618 - 20454676
Alignment:
Q  79 gttataaatattaatagtggatgtccaaatagcaaatgtgttagtggatcatactatta 137  Q
    |||| ||||||||  |||||||||||| ||||||| || |||| |||||||||||||||    
T  20454618 gttacaaatattataagtggatgtccatatagcaattgggttattggatcatactatta 20454676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 79 - 148
Target Start/End: Complemental strand, 2168810 - 2168741
Alignment:
Q  79 gttataaatattaatagtggatgtccaaatagcaaatgtgttagtggatcatactattaggttattgggc 148  Q
    ||||| |||||||  |||||||||||| ||||||| || |||| ||||||||| | |||| |||||||||    
T  2168810 gttatgaatattacaagtggatgtccatatagcaattgggttattggatcatattgttagcttattgggc 2168741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 79 - 148
Target Start/End: Complemental strand, 3110668 - 3110599
Alignment:
Q  79 gttataaatattaatagtggatgtccaaatagcaaatgtgttagtggatcatactattaggttattgggc 148  Q
    ||||| |||||||  |||||||||||| ||||||| || |||| ||||||||| | |||| |||||||||    
T  3110668 gttatgaatattacaagtggatgtccatatagcaattgggttattggatcatattgttagcttattgggc 3110599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 79 - 148
Target Start/End: Complemental strand, 9730472 - 9730403
Alignment:
Q  79 gttataaatattaatagtggatgtccaaatagcaaatgtgttagtggatcatactattaggttattgggc 148  Q
    ||||| |||||||  |||||||||||| ||||||| || |||| ||||||||| | |||| |||||||||    
T  9730472 gttatgaatattacaagtggatgtccatatagcaattgggttattggatcatattgttagcttattgggc 9730403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 79 - 148
Target Start/End: Original strand, 13985260 - 13985329
Alignment:
Q  79 gttataaatattaatagtggatgtccaaatagcaaatgtgttagtggatcatactattaggttattgggc 148  Q
    ||||| |||||||  |||||||||||| ||||||| || |||| ||||||||| | |||| |||||||||    
T  13985260 gttatgaatattacaagtggatgtccatatagcaattgggttattggatcatattgttagcttattgggc 13985329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 79 - 148
Target Start/End: Original strand, 13990832 - 13990901
Alignment:
Q  79 gttataaatattaatagtggatgtccaaatagcaaatgtgttagtggatcatactattaggttattgggc 148  Q
    ||||| |||||||  |||||||||||| ||||||| || |||| ||||||||| | |||| |||||||||    
T  13990832 gttatgaatattacaagtggatgtccatatagcaattgggttattggatcatattgttagcttattgggc 13990901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 79 - 148
Target Start/End: Original strand, 23344376 - 23344445
Alignment:
Q  79 gttataaatattaatagtggatgtccaaatagcaaatgtgttagtggatcatactattaggttattgggc 148  Q
    ||||| |||||||  |||||||||||| ||||||| || |||| ||||||||| | |||| |||||||||    
T  23344376 gttatgaatattacaagtggatgtccatatagcaattgggttattggatcatattgttagcttattgggc 23344445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 79 - 148
Target Start/End: Complemental strand, 40800797 - 40800728
Alignment:
Q  79 gttataaatattaatagtggatgtccaaatagcaaatgtgttagtggatcatactattaggttattgggc 148  Q
    ||||| |||||||  |||||||||||| ||||||| || |||| ||||||||| | |||| |||||||||    
T  40800797 gttatgaatattacaagtggatgtccatatagcaattgggttattggatcatattgttagcttattgggc 40800728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 79 - 148
Target Start/End: Complemental strand, 40802721 - 40802652
Alignment:
Q  79 gttataaatattaatagtggatgtccaaatagcaaatgtgttagtggatcatactattaggttattgggc 148  Q
    ||||| |||||||  |||||||||||| ||||||| || |||| ||||||||| | |||| |||||||||    
T  40802721 gttatgaatattacaagtggatgtccatatagcaattgagttattggatcatattgttagcttattgggc 40802652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 79 - 131
Target Start/End: Complemental strand, 9724782 - 9724730
Alignment:
Q  79 gttataaatattaatagtggatgtccaaatagcaaatgtgttagtggatcata 131  Q
    ||||| ||||||| ||||||||||||| ||||||| || |||| |||||||||    
T  9724782 gttatgaatattactagtggatgtccatatagcaattgggttattggatcata 9724730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 79 - 147
Target Start/End: Complemental strand, 13992147 - 13992079
Alignment:
Q  79 gttataaatattaatagtggatgtccaaatagcaaatgtgttagtggatcatactattaggttattggg 147  Q
    ||||| |||||||  |||||||||| | ||||||| || |||| ||| |||||||||||| ||||||||    
T  13992147 gttatgaatattataagtggatgtctatatagcaattgggttattgggtcatactattagcttattggg 13992079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 136; Significance: 5e-71; HSPs: 17)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 136; E-Value: 5e-71
Query Start/End: Original strand, 79 - 253
Target Start/End: Complemental strand, 19437695 - 19437523
Alignment:
Q  79 gttataaatattaatagtggatgtccaaatagcaaatgtgttagtggatcatactattaggttattgggcttaattcataagctactctatttccctata 178  Q
    |||||||||||||||||||||||||||||||||||||||||||||||  ||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  19437695 gttataaatattaatagtggatgtccaaatagcaaatgtgttagtgggccatactactaggttattgggcttaattcataagctactctatttccctata 19437596  T
Q  179 aatagagctcatttgtaacattgagatatacacattagtgaataagaatactgatcctattctctctgcttctcc 253  Q
    |||||||||||||||||||||||||  | |||||||||||||||||||||||| || |||||||||| |||||||    
T  19437595 aatagagctcatttgtaacattgag--acacacattagtgaataagaatactgctcttattctctcttcttctcc 19437523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 79 - 253
Target Start/End: Complemental strand, 19443270 - 19443098
Alignment:
Q  79 gttataaatattaatagtggatgtccaaatagcaaatgtgttagtggatcatactattaggttattgggcttaattcataagctactctatttccctata 178  Q
    |||||||||||||||||||||||||||||||||||||||||||||||  ||||||| |||||||||||||||||||||||||||||||||||| ||||||    
T  19443270 gttataaatattaatagtggatgtccaaatagcaaatgtgttagtgggccatactactaggttattgggcttaattcataagctactctattttcctata 19443171  T
Q  179 aatagagctcatttgtaacattgagatatacacattagtgaataagaatactgatcctattctctctgcttctcc 253  Q
    |||||||||||||||||||||||||  | |||||||||||||||||||||||| || |||||||||| |||||||    
T  19443170 aatagagctcatttgtaacattgag--acacacattagtgaataagaatactgctcttattctctcttcttctcc 19443098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 79 - 253
Target Start/End: Complemental strand, 25445217 - 25445045
Alignment:
Q  79 gttataaatattaatagtggatgtccaaatagcaaatgtgttagtggatcatactattaggttattgggcttaattcataagctactctatttccctata 178  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||  ||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  25445217 gttataaatattaatagtggatgtccaaatagcaaatgtgttaatgggccatactactaggttattgggcttaattcataagctactctatttccctata 25445118  T
Q  179 aatagagctcatttgtaacattgagatatacacattagtgaataagaatactgatcctattctctctgcttctcc 253  Q
    ||||||||||||||||||||||  |||| |||||| ||||||||||||||||  ||||||||||||| |||||||    
T  25445117 aatagagctcatttgtaacatt--gatacacacatcagtgaataagaatactcctcctattctctcttcttctcc 25445045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 79 - 251
Target Start/End: Complemental strand, 43287551 - 43287379
Alignment:
Q  79 gttataaatattaatagtggatgtccaaatagcaaatgtgttagtggatcatactattaggttattgggcttaattcataagctactctatttccctata 178  Q
    |||||||| ||||||||| |||||||||||||||||||||||| |||  ||||||| |||||||||||||||| ||||||||||||||||||| | ||||    
T  43287551 gttataaacattaatagtagatgtccaaatagcaaatgtgttattgggccatactactaggttattgggcttagttcataagctactctattttcttata 43287452  T
Q  179 aatagagctcatttgtaacattgagatatacacattagtgaataagaatactgatcctattctctctgcttct 251  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||| |||||    
T  43287451 aatagagctcatttgtaacattgagatacacacattagtgaataagaatactgctcctattctctcttcttct 43287379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 79 - 253
Target Start/End: Complemental strand, 43293296 - 43293122
Alignment:
Q  79 gttataaatattaatagtggatgtccaaatagcaaatgtgttagtggatcatactattaggttattgggcttaattcataagctactctatttccctata 178  Q
    |||||||| |||||||||||||||||||||||||||||||||| |||  ||||||| |||||||||||||||| ||||||||||||||||||| | ||||    
T  43293296 gttataaacattaatagtggatgtccaaatagcaaatgtgttattgggccatactactaggttattgggcttagttcataagctactctattttcttata 43293197  T
Q  179 aatagagctcatttgtaacattgagatatacacattagtgaataagaatactgatcctattctctctgcttctcc 253  Q
    ||||||||||||||||||||||| |||| |||||| ||||||||||||||||| ||||||||||||| |||||||    
T  43293196 aatagagctcatttgtaacattgggatacacacatcagtgaataagaatactgctcctattctctcttcttctcc 43293122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 79 - 241
Target Start/End: Complemental strand, 25454875 - 25454715
Alignment:
Q  79 gttataaatattaatagtggatgtccaaatagcaaatgtgttagtggatcatactattaggttattgggcttaattcataagctactctatttccctata 178  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||  ||||||| |||||||||| ||||||||||||||||||||||||||||||||    
T  25454875 gttataaatattaatagtgaatgtccaaatagcaaatgtgttagtgggccatactactaggttattgagcttaattcataagctactctatttccctata 25454776  T
Q  179 aatagagctcatttgtaacattgagatatacacattagtgaataagaatactgatcctattct 241  Q
    ||||||||||||||||||||||  |||| |||||| | ||||||||||||||| |||||||||    
T  25454775 aatagagctcatttgtaacatt--gatacacacatcattgaataagaatactgctcctattct 25454715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 79 - 253
Target Start/End: Complemental strand, 24053446 - 24053273
Alignment:
Q  79 gttataaatattaatagtggatgtccaaatagcaaatgtgttagtggatcatactattaggttattgggcttaattcataagctactctatttccctata 178  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||  ||||||| |||||||||||||||| ||||||||||||||||||| | ||||    
T  24053446 gttataaatattaatagtggatgtccaaatagcaaatgtgttattgggccatactactaggttattgggcttagttcataagctactctattttcttata 24053347  T
Q  179 aatagagctcatttgtaacattgagatatacacattagtgaataagaatactgatcctattctctctgcttctcc 253  Q
    |||||||||||||||||| ||||||||| | ||||||||||||||||||| || ||||||||||| | |||||||    
T  24053346 aatagagctcatttgtaatattgagatacatacattagtgaataagaata-tgctcctattctcttttcttctcc 24053273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 79 - 253
Target Start/End: Complemental strand, 24056781 - 24056608
Alignment:
Q  79 gttataaatattaatagtggatgtccaaatagcaaatgtgttagtggatcatactattaggttattgggcttaattcataagctactctatttccctata 178  Q
    ||||||||||||||||||||||||||| ||||||||||||||| |||  ||||||| ||||||||||| |||| ||||||||||||||||||| | ||||    
T  24056781 gttataaatattaatagtggatgtccagatagcaaatgtgttattggc-catactactaggttattggacttagttcataagctactctattttcttata 24056683  T
Q  179 aatagagctcatttgtaacattgagatatacacattagtgaataagaatactgatcctattctctctgcttctcc 253  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||| | ||||||||| | |||||||    
T  24056682 aatagagctcatttgtaacattgagatacacacattagtgaataagaatactgcttctattctcttttcttctcc 24056608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 79 - 200
Target Start/End: Original strand, 31437152 - 31437273
Alignment:
Q  79 gttataaatattaatagtggatgtccaaatagcaaatgtgttagtggatcatactattaggttattgggcttaattcataagctactctatttccctata 178  Q
    ||||||||||||||||||||||||||||| | |||||| |||| |||| |||| || |  ||||||||||||| ||||||||||||||||||| ||||||    
T  31437152 gttataaatattaatagtggatgtccaaacaacaaatgagttaatggaccataatactgtgttattgggcttagttcataagctactctattttcctata 31437251  T
Q  179 aatagagctcatttgtaacatt 200  Q
    |||| || ||||||||||||||    
T  31437252 aataaagttcatttgtaacatt 31437273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 79 - 200
Target Start/End: Original strand, 31433046 - 31433167
Alignment:
Q  79 gttataaatattaatagtggatgtccaaatagcaaatgtgttagtggatcatactattaggttattgggcttaattcataagctactctatttccctata 178  Q
    |||||||||||||||||||||||||||||||||||||  |||| |||| ||| | | ||| |||||| ||||| |||||||| || ||||||||||||||    
T  31433046 gttataaatattaatagtggatgtccaaatagcaaattagttaatggagcatgcaactagtttattgagcttagttcataagatattctatttccctata 31433145  T
Q  179 aatagagctcatttgtaacatt 200  Q
    ||||  | ||||||||||||||    
T  31433146 aataatgttcatttgtaacatt 31433167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 128 - 200
Target Start/End: Original strand, 8872290 - 8872362
Alignment:
Q  128 catactattaggttattgggcttaattcataagctactctatttccctataaatagagctcatttgtaacatt 200  Q
    ||||||||| | |||||||||||| |  ||| |||||| ||||||||||||||||||| ||||||||||||||    
T  8872290 catactatttgattattgggcttagtctataggctactatatttccctataaatagagttcatttgtaacatt 8872362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 79 - 148
Target Start/End: Original strand, 22424978 - 22425047
Alignment:
Q  79 gttataaatattaatagtggatgtccaaatagcaaatgtgttagtggatcatactattaggttattgggc 148  Q
    ||||| |||||||  |||||||||||| |||||||||| |||| ||||||||| | |||| |||||||||    
T  22424978 gttatgaatattacaagtggatgtccatatagcaaatgggttattggatcatattgttagcttattgggc 22425047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 79 - 145
Target Start/End: Original strand, 26694153 - 26694219
Alignment:
Q  79 gttataaatattaatagtggatgtccaaatagcaaatgtgttagtggatcatactattaggttattg 145  Q
    ||||| |||||||  |||||||||||| ||||||| || |||| ||||||||||| |||| ||||||    
T  26694153 gttatgaatattacaagtggatgtccatatagcaattgggttattggatcatactgttagtttattg 26694219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 79 - 148
Target Start/End: Original strand, 14893226 - 14893295
Alignment:
Q  79 gttataaatattaatagtggatgtccaaatagcaaatgtgttagtggatcatactattaggttattgggc 148  Q
    ||||| |||||||  |||||||||||| ||||||| || |||| ||||||||| | |||| |||||||||    
T  14893226 gttatgaatattacaagtggatgtccatatagcaattgggttattggatcatattgttagcttattgggc 14893295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 79 - 148
Target Start/End: Original strand, 22430348 - 22430417
Alignment:
Q  79 gttataaatattaatagtggatgtccaaatagcaaatgtgttagtggatcatactattaggttattgggc 148  Q
    ||||| |||||||  |||||||||||| ||||||| || |||| ||||||||| | |||| |||||||||    
T  22430348 gttatgaatattacaagtggatgtccatatagcaattgggttattggatcatattgttagcttattgggc 22430417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 79 - 148
Target Start/End: Original strand, 22435942 - 22436011
Alignment:
Q  79 gttataaatattaatagtggatgtccaaatagcaaatgtgttagtggatcatactattaggttattgggc 148  Q
    ||||| |||||||  |||||||||||| ||||||| || |||| ||||||||| | |||| |||||||||    
T  22435942 gttatgaatattacaagtggatgtccatatagcaattgggttattggatcatattgttagcttattgggc 22436011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 79 - 148
Target Start/End: Original strand, 43776991 - 43777060
Alignment:
Q  79 gttataaatattaatagtggatgtccaaatagcaaatgtgttagtggatcatactattaggttattgggc 148  Q
    ||||| |||||||  |||||||||||| ||||||| || |||| ||||||||| | |||| |||||||||    
T  43776991 gttatgaatattacaagtggatgtccatatagcaattgggttattggatcatattgttagcttattgggc 43777060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 135; Significance: 2e-70; HSPs: 12)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 79 - 252
Target Start/End: Complemental strand, 30714373 - 30714202
Alignment:
Q  79 gttataaatattaatagtggatgtccaaatagcaaatgtgttagtggatcatactattaggttattgggcttaattcataagctactctatttccctata 178  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||  ||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  30714373 gttataaatattaatagtggatgtccaaatagcaattgtgttagtgggccatactactaggttattgggcttaattcataagctactctatttccctata 30714274  T
Q  179 aatagagctcatttgtaacattgagatatacacattagtgaataagaatactgatcctattctctctgcttctc 252  Q
    ||||||||||||||||||||||  ||||||||||| ||||||||||||||||| ||||||||||||| ||||||    
T  30714273 aatagagctcatttgtaacatt--gatatacacatcagtgaataagaatactgctcctattctctcttcttctc 30714202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 79 - 252
Target Start/End: Complemental strand, 30722150 - 30721979
Alignment:
Q  79 gttataaatattaatagtggatgtccaaatagcaaatgtgttagtggatcatactattaggttattgggcttaattcataagctactctatttccctata 178  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||  ||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  30722150 gttataaatattaatagtggatgtccaaatagcaattgtgttagtgggccatactactaggttattgggcttaattcataagctactctatttccctata 30722051  T
Q  179 aatagagctcatttgtaacattgagatatacacattagtgaataagaatactgatcctattctctctgcttctc 252  Q
    ||||||||||||||||||||||  ||||||||||| ||||||||||||||||| ||||||||||||| ||||||    
T  30722050 aatagagctcatttgtaacatt--gatatacacatcagtgaataagaatactgctcctattctctcttcttctc 30721979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 79 - 252
Target Start/End: Complemental strand, 30727758 - 30727587
Alignment:
Q  79 gttataaatattaatagtggatgtccaaatagcaaatgtgttagtggatcatactattaggttattgggcttaattcataagctactctatttccctata 178  Q
    |||||||||||||||||||||||||||||||||||||||||||||||  ||||||| |||||||||||||||||||||||||||||| ||||| |||| |    
T  30727758 gttataaatattaatagtggatgtccaaatagcaaatgtgttagtgggccatactactaggttattgggcttaattcataagctactatattttcctaaa 30727659  T
Q  179 aatagagctcatttgtaacattgagatatacacattagtgaataagaatactgatcctattctctctgcttctc 252  Q
    ||||||||||||||||||||||  ||||||||||| ||||||||||||||||| ||||||||||||| ||||||    
T  30727658 aatagagctcatttgtaacatt--gatatacacatcagtgaataagaatactgctcctattctctcttcttctc 30727587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 79 - 228
Target Start/End: Original strand, 21241173 - 21241317
Alignment:
Q  79 gttataaatattaatagtggatgtccaaatagcaaatgtgttagtggatcatactattaggttattgggcttaattcataagctactctatttccctata 178  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||| ||||||| |||||| ||||||||| ||||||||||||||||||||||||||    
T  21241173 gttataaatattaatattggatgtccaaatagcaaatgtgttagtggaccatactactaggtt-ttgggcttagttcataagctactctatttccctata 21241271  T
Q  179 aatagagctcatttgtaacattgagatatacacattagtgaataagaata 228  Q
    |||||||||||||||||||||||    ||||| | |||||||||||||||    
T  21241272 aatagagctcatttgtaacattg----atacagactagtgaataagaata 21241317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 79 - 228
Target Start/End: Original strand, 21247677 - 21247821
Alignment:
Q  79 gttataaatattaatagtggatgtccaaatagcaaatgtgttagtggatcatactattaggttattgggcttaattcataagctactctatttccctata 178  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||| ||||||| |||||| ||||||||| ||||||||||||||||||||||||||    
T  21247677 gttataaatattaatattggatgtccaaatagcaaatgtgttagtggaccatactactaggtt-ttgggcttagttcataagctactctatttccctata 21247775  T
Q  179 aatagagctcatttgtaacattgagatatacacattagtgaataagaata 228  Q
    |||||||||||||||||||||||    ||||| | |||||||||||||||    
T  21247776 aatagagctcatttgtaacattg----atacagactagtgaataagaata 21247821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 79 - 228
Target Start/End: Original strand, 37204236 - 37204382
Alignment:
Q  79 gttataaatattaatagtggatgtccaaatagcaaatgtgttagtggatcatactattaggttattgggcttaattcataagctactctatttccctata 178  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||  ||||||| |||||| ||||||||| ||||| ||||||||||||||||||||    
T  37204236 gttataaatattaatattggatgtccaaatagcaaatgtgttagtgggccatactactaggtt-ttgggcttagttcattagctactctatttccctata 37204334  T
Q  179 aatagagctcatttgtaacattgagatatacacattagtgaataagaata 228  Q
    ||||||||||||||||||||||  |||| |||||| ||||||||||||||    
T  37204335 aatagagctcatttgtaacatt--gatacacacatcagtgaataagaata 37204382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 79 - 228
Target Start/End: Original strand, 37209713 - 37209859
Alignment:
Q  79 gttataaatattaatagtggatgtccaaatagcaaatgtgttagtggatcatactattaggttattgggcttaattcataagctactctatttccctata 178  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||  ||||||| |||||| ||||||||| ||||| ||||||||||||||||||||    
T  37209713 gttataaatattaatattggatgtccaaatagcaaatgtgttagtgggccatactactaggtt-ttgggcttagttcattagctactctatttccctata 37209811  T
Q  179 aatagagctcatttgtaacattgagatatacacattagtgaataagaata 228  Q
    ||||||||||||||||||||||  |||| |||||| ||||||||||||||    
T  37209812 aatagagctcatttgtaacatt--gatacacacatcagtgaataagaata 37209859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 92; E-Value: 9e-45
Query Start/End: Original strand, 79 - 202
Target Start/End: Complemental strand, 27679782 - 27679660
Alignment:
Q  79 gttataaatattaatagtggatgtccaaatagcaaatgtgttagtggatcatactattaggttattgggcttaattcataagctactctatttccctata 178  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||  ||||||| |||||| ||||||||| ||||||||||||||||||||||||||    
T  27679782 gttataaatattaatattggatgtccaaatagcaaatgtgttagtgggccatactactaggtt-ttgggcttagttcataagctactctatttccctata 27679684  T
Q  179 aatagagctcatttgtaacattga 202  Q
    ||||||||| ||||||||||||||    
T  27679683 aatagagctaatttgtaacattga 27679660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 79 - 202
Target Start/End: Complemental strand, 27683564 - 27683442
Alignment:
Q  79 gttataaatattaatagtggatgtccaaatagcaaatgtgttagtggatcatactattaggttattgggcttaattcataagctactctatttccctata 178  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||  ||||||| |||||| ||||| ||| |||||||| |||||||||||||||||    
T  27683564 gttataaatattaatattggatgtccaaatagcaaatgtgttagtgggccatactactaggtt-ttgggtttagttcataagttactctatttccctata 27683466  T
Q  179 aatagagctcatttgtaacattga 202  Q
    ||||||||||||||||||||||||    
T  27683465 aatagagctcatttgtaacattga 27683442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 87 - 200
Target Start/End: Complemental strand, 24043004 - 24042891
Alignment:
Q  87 tattaatagtggatgtccaaatagcaaatgtgttagtggatcatactattaggttattgggcttaattcataagctactctatttccctataaatagagc 186  Q
    ||||||| |||| |||||||||| ||||||||||| |||  |||| |||||| |||||||||||| |||||||||||||||||||| |||||||||||||    
T  24043004 tattaattgtgggtgtccaaataacaaatgtgttaatgggccataatattagattattgggcttagttcataagctactctatttctctataaatagagc 24042905  T
Q  187 tcatttgtaacatt 200  Q
    |||| |||||||||    
T  24042904 tcatatgtaacatt 24042891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 79 - 184
Target Start/End: Original strand, 26196897 - 26197002
Alignment:
Q  79 gttataaatattaatagtggatgtccaaatagcaaatgtgttagtggatcatactattaggttattgggcttaattcataagctactctatttccctata 178  Q
    |||||||||||||||||||||||| ||||||||||||  |||  |||  ||||||| |||||||||||||||| ||||||||||||||||||||||||||    
T  26196897 gttataaatattaatagtggatgttcaaatagcaaataggtttatgggccatactaataggttattgggcttagttcataagctactctatttccctata 26196996  T
Q  179 aataga 184  Q
    ||||||    
T  26196997 aataga 26197002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 79 - 171
Target Start/End: Complemental strand, 26197088 - 26196996
Alignment:
Q  79 gttataaatattaatagtggatgtccaaatagcaaatgtgttagtggatcatactattaggttattgggcttaattcataagctactctattt 171  Q
    |||||||||||||||||||||||||||||||||||||  |||  | |  ||||||| |||||||||||||||| ||||||||||  |||||||    
T  26197088 gttataaatattaatagtggatgtccaaatagcaaataggtttataggccatactaataggttattgggcttagttcataagcttttctattt 26196996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 132; Significance: 1e-68; HSPs: 19)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 79 - 253
Target Start/End: Complemental strand, 31093105 - 31092933
Alignment:
Q  79 gttataaatattaatagtggatgtccaaatagcaaatgtgttagtggatcatactattaggttattgggcttaattcataagctactctatttccctata 178  Q
    |||||||||||||||||||||||||||||||||||||||||||||||  ||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  31093105 gttataaatattaatagtggatgtccaaatagcaaatgtgttagtgggccatactactaggttattgggcttaattcataagctactctatttccctata 31093006  T
Q  179 aatagagctcatttgtaacattgagatatacacattagtgaataagaatactgatcctattctctctgcttctcc 253  Q
    ||||||||||||||||||||||  |||||| |||| ||||||||| ||||||| ||||||||||||| |||||||    
T  31093005 aatagagctcatttgtaacatt--gatatatacatcagtgaataaaaatactgctcctattctctcttcttctcc 31092933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 131; E-Value: 5e-68
Query Start/End: Original strand, 79 - 253
Target Start/End: Complemental strand, 37365309 - 37365135
Alignment:
Q  79 gttataaatattaatagtggatgtccaaatagcaaatgtgttagtggatcatactattaggttattgggcttaattcataagctactctatttccctata 178  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||| ||||||| |||||||||||||||| ||||||||||||| ||||| | ||||    
T  37365309 gttataaatattaatagtggatgtccaaatagcaaatgtgttattggaccatactactaggttattgggcttagttcataagctactatattttcttata 37365210  T
Q  179 aatagagctcatttgtaacattgagatatacacattagtgaataagaatactgatcctattctctctgcttctcc 253  Q
    |||||||||||||||||||||||||||| |||||||| ||||||||||||||| ||||||||||||| |||||||    
T  37365209 aatagagctcatttgtaacattgagatacacacattattgaataagaatactgttcctattctctcttcttctcc 37365135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 79 - 253
Target Start/End: Original strand, 11654021 - 11654193
Alignment:
Q  79 gttataaatattaatagtggatgtccaaatagcaaatgtgttagtggatcatactattaggttattgggcttaattcataagctactctatttccctata 178  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||| ||||||||||||||    
T  11654021 gttataaatattaatagtggatatccaaatagcaaatgtgttagtggatcatactactatgttattgggcttaattcataagctattctatttccctata 11654120  T
Q  179 aatagagctcatttgtaacattgagatatacacattagtgaataagaatactgatcctattctctctgcttctcc 253  Q
    ||||||| ||||||||||||||  ||||||||||| | ||||||||||||||| ||||||||||||| |||||||    
T  11654121 aatagagttcatttgtaacatt--gatatacacatcaatgaataagaatactgctcctattctctcttcttctcc 11654193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 79 - 253
Target Start/End: Complemental strand, 31099711 - 31099539
Alignment:
Q  79 gttataaatattaatagtggatgtccaaatagcaaatgtgttagtggatcatactattaggttattgggcttaattcataagctactctatttccctata 178  Q
    |||||||||||||||||||||||||||||||||||||||||||||||  ||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  31099711 gttataaatattaatagtggatgtccaaatagcaaatgtgttagtgggccatactactaggttattgggcttaattcataagctactctatttccctata 31099612  T
Q  179 aatagagctcatttgtaacattgagatatacacattagtgaataagaatactgatcctattctctctgcttctcc 253  Q
    ||||||||||||||||||||||  |||||| |||| ||||||||| ||||||| || |||||||||| |||||||    
T  31099611 aatagagctcatttgtaacatt--gatatatacatcagtgaataaaaatactgctcttattctctcttcttctcc 31099539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 79 - 253
Target Start/End: Complemental strand, 27347325 - 27347151
Alignment:
Q  79 gttataaatattaatagtggatgtccaaatagcaaatgtgttagtggatcatactattaggttattgggcttaattcataagctactctatttccctata 178  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||   ||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  27347325 gttataaatattaatagtggatgtccaaatagcaaatgtgttattgagccatactactaggttattgggcttaattcataagctactctatttccctata 27347226  T
Q  179 aatagagctcatttgtaacattgagatatacacattagtgaataagaatactgatcctattctctctgcttctcc 253  Q
    |||||||||||||||||||||||||||| |||||| |||||||||||||||   || |||||||||| |||||||    
T  27347225 aatagagctcatttgtaacattgagatacacacatcagtgaataagaatacatctcttattctctcttcttctcc 27347151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 124; E-Value: 7e-64
Query Start/End: Original strand, 79 - 253
Target Start/End: Original strand, 11660178 - 11660350
Alignment:
Q  79 gttataaatattaatagtggatgtccaaatagcaaatgtgttagtggatcatactattaggttattgggcttaattcataagctactctatttccctata 178  Q
    |||||||||||||||||||||||||||| || |||||||||||||||  ||||||| || ||||||||||||||||||||||||||||||||||||||||    
T  11660178 gttataaatattaatagtggatgtccaagtaacaaatgtgttagtgggccatactactatgttattgggcttaattcataagctactctatttccctata 11660277  T
Q  179 aatagagctcatttgtaacattgagatatacacattagtgaataagaatactgatcctattctctctgcttctcc 253  Q
    ||||||||||||||||||||||  ||||||||||| ||||||||||||||||| || |||||||||| |||||||    
T  11660278 aatagagctcatttgtaacatt--gatatacacatcagtgaataagaatactgctcatattctctcttcttctcc 11660350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 124; E-Value: 7e-64
Query Start/End: Original strand, 79 - 253
Target Start/End: Complemental strand, 18540863 - 18540691
Alignment:
Q  79 gttataaatattaatagtggatgtccaaatagcaaatgtgttagtggatcatactattaggttattgggcttaattcataagctactctatttccctata 178  Q
    |||||||||||||||||||||||||||||||||||||||||||||||  ||||||| |||||||||||||||| ||||||||||||||||||| ||||||    
T  18540863 gttataaatattaatagtggatgtccaaatagcaaatgtgttagtgggccatactactaggttattgggcttagttcataagctactctattttcctata 18540764  T
Q  179 aatagagctcatttgtaacattgagatatacacattagtgaataagaatactgatcctattctctctgcttctcc 253  Q
    ||||||||||||||||||||||  |||||||| || ||||||||||||||||| ||||||| ||||| |||||||    
T  18540763 aatagagctcatttgtaacatt--gatatacagatcagtgaataagaatactgctcctattttctcttcttctcc 18540691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 79 - 253
Target Start/End: Complemental strand, 35625410 - 35625236
Alignment:
Q  79 gttataaatattaatagtggatgtccaaatagcaaatgtgttagtggatcatactattaggttattgggcttaattcataagctactctatttccctata 178  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||  ||||||| ||| |||||||||||| ||||||||||||| ||||| | ||||    
T  35625410 gttataaatattaatagtggatgtccaaatagcaaatgtgttattgggccatactactagattattgggcttagttcataagctactatattttcttata 35625311  T
Q  179 aatagagctcatttgtaacattgagatatacacattagtgaataagaatactgatcctattctctctgcttctcc 253  Q
    |||||||||||||||||||||||||||| |||||||| ||||||||||||||| ||||||||||||| |||||||    
T  35625310 aatagagctcatttgtaacattgagatacacacattattgaataagaatactgctcctattctctcttcttctcc 35625236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 79 - 253
Target Start/End: Complemental strand, 18535137 - 18534965
Alignment:
Q  79 gttataaatattaatagtggatgtccaaatagcaaatgtgttagtggatcatactattaggttattgggcttaattcataagctactctatttccctata 178  Q
    |||||||||||||||||||||||||||||||||||||||||||||||  ||||||| |||||||||||||||| ||||||||||||||||||| ||||||    
T  18535137 gttataaatattaatagtggatgtccaaatagcaaatgtgttagtgggccatactactaggttattgggcttagttcataagctactctattttcctata 18535038  T
Q  179 aatagagctcatttgtaacattgagatatacacattagtgaataagaatactgatcctattctctctgcttctcc 253  Q
    ||||||||||||||||||||||  |||||||| || ||||||||||||||||| ||| ||| ||||| |||||||    
T  18535037 aatagagctcatttgtaacatt--gatatacagatcagtgaataagaatactgctccgattttctcttcttctcc 18534965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 119; E-Value: 7e-61
Query Start/End: Original strand, 79 - 253
Target Start/End: Complemental strand, 37356891 - 37356717
Alignment:
Q  79 gttataaatattaatagtggatgtccaaatagcaaatgtgttagtggatcatactattaggttattgggcttaattcataagctactctatttccctata 178  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||  ||||||| |||||||||||||||| ||||||||||||| ||||| | ||||    
T  37356891 gttataaatattaatagtggatgtccaaatagcaaatgtgttattgggccatactactaggttattgggcttagttcataagctactatattttcttata 37356792  T
Q  179 aatagagctcatttgtaacattgagatatacacattagtgaataagaatactgatcctattctctctgcttctcc 253  Q
    |||||||||||||| ||||||||||||| |||||||| ||||||||||||| | ||||||||||||| |||||||    
T  37356791 aatagagctcatttataacattgagatacacacattattgaataagaataccgttcctattctctcttcttctcc 37356717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 79 - 228
Target Start/End: Original strand, 7876092 - 7876239
Alignment:
Q  79 gttataaatattaatagtggatgtccaaatagcaaatgtgttagtggatcatactattaggttattgggcttaattcataagctactctatttccctata 178  Q
    ||||||||||||||||||| ||||||||||| |||||||||||||||| ||||||| ||||||||| |||||| ||| ||||||||| ||||||||||||    
T  7876092 gttataaatattaatagtgaatgtccaaataacaaatgtgttagtggaccatactactaggttattaggcttagttcgtaagctactatatttccctata 7876191  T
Q  179 aatagagctcatttgtaacattgagatatacacattagtgaataagaata 228  Q
    |||||||||||||||||||||||||  |||||||||||||||||||||||    
T  7876192 aatagagctcatttgtaacattgag--atacacattagtgaataagaata 7876239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 79 - 253
Target Start/End: Original strand, 38736040 - 38736214
Alignment:
Q  79 gttataaatattaatagtggatgtccaaatagcaaatgtgttagtggatcatactattaggttattgggcttaattcataagctactctatttccctata 178  Q
    |||||||||||||||||||| ||||||||||| |||| ||||| |||  |||||||||||||||||||||||| ||||||||||||||||||| | ||||    
T  38736040 gttataaatattaatagtggttgtccaaatagaaaatatgttattgggccatactattaggttattgggcttagttcataagctactctattttcttata 38736139  T
Q  179 aatagagctcatttgtaacattgagatatacacattagtgaataagaatactgatcctattctctctgcttctcc 253  Q
    ||||||| |||||||||||||| ||||| | |||| ||||||||| ||||||| || |||||||||| |||||||    
T  38736140 aatagagttcatttgtaacattcagatacatacatcagtgaataataatactgctcatattctctcttcttctcc 38736214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 79 - 228
Target Start/End: Original strand, 38984913 - 38985057
Alignment:
Q  79 gttataaatattaatagtggatgtccaaatagcaaatgtgttagtggatcatactattaggttattgggcttaattcataagctactctatttccctata 178  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||  ||||||| |||||| ||||||||| ||||||||||||||||||||||||||    
T  38984913 gttataaatattaatattggatgtccaaatagcaaatgtgttagtgggccatactactaggtt-ttgggcttagttcataagctactctatttccctata 38985011  T
Q  179 aatagagctcatttgtaacattgagatatacacattagtgaataagaata 228  Q
    |||||||||||||||||||||||    ||||||| |||||||||||||||    
T  38985012 aatagagctcatttgtaacattg----atacacactagtgaataagaata 38985057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 79 - 228
Target Start/End: Original strand, 38991100 - 38991244
Alignment:
Q  79 gttataaatattaatagtggatgtccaaatagcaaatgtgttagtggatcatactattaggttattgggcttaattcataagctactctatttccctata 178  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||  ||||||| |||||| ||||||||| ||||||||||||||||||||||||||    
T  38991100 gttataaatattaatattggatgtccaaatagcaaatgtgttagtgggccatactactaggtt-ttgggcttagttcataagctactctatttccctata 38991198  T
Q  179 aatagagctcatttgtaacattgagatatacacattagtgaataagaata 228  Q
    |||||||||||||||||||||||    ||||||| |||||||||||||||    
T  38991199 aatagagctcatttgtaacattg----atacacactagtgaataagaata 38991244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 79 - 204
Target Start/End: Original strand, 28519276 - 28519400
Alignment:
Q  79 gttataaatattaatagtggatgtccaaatagcaaatgtgttagtggatcatactattaggttattgggcttaattcataagctactctatttccctata 178  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||  ||||||| |||||| ||||||||| ||||||||||||||||||||||||||    
T  28519276 gttataaatattaatattggatgtccaaatagcaaatgtgttagtgggccatactactaggtt-ttgggcttagttcataagctactctatttccctata 28519374  T
Q  179 aatagagctcatttgtaacattgaga 204  Q
    ||||||||||||||||||||||||||    
T  28519375 aatagagctcatttgtaacattgaga 28519400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 79 - 228
Target Start/End: Original strand, 28512813 - 28512955
Alignment:
Q  79 gttataaatattaatagtggatgtccaaatagcaaatgtgttagtggatcatactattaggttattgggcttaattcataagctactctatttccctata 178  Q
    |||||||||||||||| ||||||||||||  ||||||||||||||||  ||||||| |||||| ||||||||| ||||||||||||||||||||||||||    
T  28512813 gttataaatattaatattggatgtccaaa--gcaaatgtgttagtgggccatactactaggtt-ttgggcttagttcataagctactctatttccctata 28512909  T
Q  179 aatagagctcatttgtaacattgagatatacacattagtgaataagaata 228  Q
    |||||||||||||||||||||||||    ||||| |||||||||||||||    
T  28512910 aatagagctcatttgtaacattgag----acacactagtgaataagaata 28512955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 79 - 253
Target Start/End: Original strand, 39492741 - 39492913
Alignment:
Q  79 gttataaatattaatagtggatgtccaaatagcaaatgtgttagtggatcatactattaggttattgggcttaattcataagctactctatttccctata 178  Q
    |||||||||||||||||||||||||||||||||||||  |||  ||   ||||||| ||| |||||||||||| |  |||| |||||||||||| |||||    
T  39492741 gttataaatattaatagtggatgtccaaatagcaaataggtttatgagccatactaatagattattgggcttagtctataaactactctatttctctata 39492840  T
Q  179 aatagagctcatttgtaacattgagatatacacattagtgaataagaatactgatcctattctctctgcttctcc 253  Q
    |||| |  |||||||||| | ||||||||  | || ||||||||||||||||| || |||||||||| |||||||    
T  39492841 aataaaattcatttgtaagagtgagatat--atatcagtgaataagaatactgctcatattctctcttcttctcc 39492913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 79 - 148
Target Start/End: Original strand, 15716624 - 15716693
Alignment:
Q  79 gttataaatattaatagtggatgtccaaatagcaaatgtgttagtggatcatactattaggttattgggc 148  Q
    ||||| |||||||  |||||||||||| ||||||| || |||| ||||||||| | |||| |||||||||    
T  15716624 gttatgaatattacaagtggatgtccatatagcaattgggttattggatcatattgttagcttattgggc 15716693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 79 - 148
Target Start/End: Complemental strand, 26711636 - 26711567
Alignment:
Q  79 gttataaatattaatagtggatgtccaaatagcaaatgtgttagtggatcatactattaggttattgggc 148  Q
    ||||| |||||||  |||||||||||| ||||||| || |||| ||||||||| | |||| |||||||||    
T  26711636 gttatgaatattacaagtggatgtccatatagcaattgggttattggatcatattgttagcttattgggc 26711567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 128; Significance: 3e-66; HSPs: 15)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 79 - 253
Target Start/End: Original strand, 29176545 - 29176717
Alignment:
Q  79 gttataaatattaatagtggatgtccaaatagcaaatgtgttagtggatcatactattaggttattgggcttaattcataagctactctatttccctata 178  Q
    |||||||||||||||| |||||||||||||||||||||||||||||| |||||||| |||||||||||||||| ||||||||||||||||||||||||||    
T  29176545 gttataaatattaatattggatgtccaaatagcaaatgtgttagtgggtcatactactaggttattgggcttagttcataagctactctatttccctata 29176644  T
Q  179 aatagagctcatttgtaacattgagatatacacattagtgaataagaatactgatcctattctctctgcttctcc 253  Q
    ||||||||||||||||||||||  |||| |||||||||||||||||||||||| | ||||||| ||| |||||||    
T  29176645 aatagagctcatttgtaacatt--gatacacacattagtgaataagaatactgcttctattctttcttcttctcc 29176717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 87 - 253
Target Start/End: Original strand, 29185532 - 29185696
Alignment:
Q  87 tattaatagtggatgtccaaatagcaaatgtgttagtggatcatactattaggttattgggcttaattcataagctactctatttccctataaatagagc 186  Q
    |||||||| ||||||||||||||| ||||||||||||||  ||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  29185532 tattaatattggatgtccaaatagaaaatgtgttagtgggccatactactaggttattgggcttagttcataagctactctatttccctataaatagagc 29185631  T
Q  187 tcatttgtaacattgagatatacacattagtgaataagaatactgatcctattctctctgcttctcc 253  Q
    ||||||||||||||  |||| |||||||||||||||||||||||| | ||||||| ||| |||||||    
T  29185632 tcatttgtaacatt--gatacacacattagtgaataagaatactgcttctattctttcttcttctcc 29185696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 79 - 203
Target Start/End: Original strand, 8242542 - 8242666
Alignment:
Q  79 gttataaatattaatagtggatgtccaaatagcaaatgtgttagtggatcatactattaggttattgggcttaattcataagctactctatttccctata 178  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||| || ||| ||||| |||||||||||||||||||||||||||||||||    
T  8242542 gttataaatattaatagtggatgtccaaatagcaaatgtgttagtgggtcatattactagattattaggcttaattcataagctactctatttccctata 8242641  T
Q  179 aatagagctcatttgtaacattgag 203  Q
    |||||||||||||||||||||||||    
T  8242642 aatagagctcatttgtaacattgag 8242666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 79 - 252
Target Start/End: Complemental strand, 340451 - 340278
Alignment:
Q  79 gttataaatattaatagtggatgtccaaatagcaaatgtgttagtggatcatactattaggttattgggcttaattcataagctactctatttccctata 178  Q
    ||||||||||||||||| ||||||||||||| ||||||||||| ||   ||||||| |||||||||||||||| ||||||||||||||||||| | ||||    
T  340451 gttataaatattaatagcggatgtccaaataacaaatgtgttattgagccatactactaggttattgggcttagttcataagctactctattttcttata 340352  T
Q  179 aatagagctcatttgtaacattgagatatacacattagtgaataagaatactgatcctattctctctgcttctc 252  Q
    ||||||||||||||||||||||| |||| |||||| |||||||| ||||| |  ||||||||||||| ||||||    
T  340351 aatagagctcatttgtaacattgggatacacacatcagtgaataggaatatttctcctattctctcttcttctc 340278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 79 - 245
Target Start/End: Complemental strand, 346685 - 346519
Alignment:
Q  79 gttataaatattaatagtggatgtccaaatagcaaatgtgttagtggatcatactattaggttattgggcttaattcataagctactctatttccctata 178  Q
    ||||||||||||||||| ||||||||||||||||||||||||| ||   ||||||| |||||||||| ||||| ||||||||||||||||||| | ||||    
T  346685 gttataaatattaatagcggatgtccaaatagcaaatgtgttattgagccatactactaggttattgagcttagttcataagctactctattttcttata 346586  T
Q  179 aatagagctcatttgtaacattgagatatacacattagtgaataagaatactgatcctattctctct 245  Q
    ||||||||||||||||||||||| |||| |||||| |||||||| ||||| |  |||||||||||||    
T  346585 aatagagctcatttgtaacattgggatacacacatcagtgaataggaatatttctcctattctctct 346519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 79 - 228
Target Start/End: Original strand, 22822538 - 22822684
Alignment:
Q  79 gttataaatattaatagtggatgtccaaatagcaaatgtgttagtggatcatactattaggttattgggcttaattcataagctactctatttccctata 178  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||  ||||||| |||||| ||||||||| ||||| ||||||||||||||||||||    
T  22822538 gttataaatattaatattggatgtccaaatagcaaatgtgttagtgggccatactactaggtt-ttgggcttagttcattagctactctatttccctata 22822636  T
Q  179 aatagagctcatttgtaacattgagatatacacattagtgaataagaata 228  Q
    ||||||||||||||||||||||  |||| |||||| ||||||||||||||    
T  22822637 aatagagctcatttgtaacatt--gatacacacatcagtgaataagaata 22822684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 79 - 228
Target Start/End: Original strand, 22826841 - 22826987
Alignment:
Q  79 gttataaatattaatagtggatgtccaaatagcaaatgtgttagtggatcatactattaggttattgggcttaattcataagctactctatttccctata 178  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||  ||||||| |||||| ||||||||| ||||| ||||||||||||||||||||    
T  22826841 gttataaatattaatattggatgtccaaatagcaaatgtgttagtgggccatactactaggtt-ttgggcttagttcattagctactctatttccctata 22826939  T
Q  179 aatagagctcatttgtaacattgagatatacacattagtgaataagaata 228  Q
    ||||||||||||||||||||||  |||| |||||| ||||||||||||||    
T  22826940 aatagagctcatttgtaacatt--gatacacacatcagtgaataagaata 22826987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 79 - 203
Target Start/End: Original strand, 8248111 - 8248235
Alignment:
Q  79 gttataaatattaatagtggatgtccaaatagcaaatgtgttagtggatcatactattaggttattgggcttaattcataagctactctatttccctata 178  Q
    |||||||||||||||||||||||||||||||||||||||||||||||  |||| || ||| ||||| |||||||||||||||||||||||||| ||||||    
T  8248111 gttataaatattaatagtggatgtccaaatagcaaatgtgttagtgggccatattactagattattaggcttaattcataagctactctattttcctata 8248210  T
Q  179 aatagagctcatttgtaacattgag 203  Q
    |||||||||||||||||||||||||    
T  8248211 aatagagctcatttgtaacattgag 8248235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 79 - 251
Target Start/End: Complemental strand, 25830546 - 25830376
Alignment:
Q  79 gttataaatattaatagtggatgtccaaatagcaaatgtgttagtggatcatactattaggttattgggcttaattcataagctactctatttccctata 178  Q
    |||||||||||||||||||||||||||||||||||||  |||| |||   || ||| ||| || ||||||||| | ||||||||| | ||||||||||||    
T  25830546 gttataaatattaatagtggatgtccaaatagcaaattggttaatgggctat-ctactagattgttgggcttagtccataagctattatatttccctata 25830448  T
Q  179 aatagagctcatttgtaacattgagatatacacattagtgaataagaatactgatcc-tattctctctgcttct 251  Q
    |||||||||| |||||| |||||||    |||||  ||||||||||||||||  ||| |||||||||| |||||    
T  25830447 aatagagctcctttgtagcattgag--ggacacaccagtgaataagaatacttctccttattctctcttcttct 25830376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 79 - 178
Target Start/End: Complemental strand, 2068881 - 2068782
Alignment:
Q  79 gttataaatattaatagtggatgtccaaatagcaaatgtgttagtggatcatactattaggttattgggcttaattcataagctactctatttccctata 178  Q
    |||||||||||||||||||||||||||||||||||||| |||| | |   |||||| ||| | |||||||||| | ||||||||| | ||||||||||||    
T  2068881 gttataaatattaatagtggatgtccaaatagcaaatgagttaataggctatactaatagatgattgggcttagtccataagctattatatttccctata 2068782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 80 - 196
Target Start/End: Complemental strand, 21989826 - 21989710
Alignment:
Q  80 ttataaatattaatagtggatgtccaaatagcaaatgtgttagtggatcatactattaggttattgggcttaattcataagctactctatttccctataa 179  Q
    ||||||||||||  ||| |||||||||||| |||||| | ||  || |||||||||||  |||||| | ||| | ||||||||||||| ||| ||| |||    
T  21989826 ttataaatattataagtagatgtccaaataacaaatgagctaacgggtcatactattatattattgtgtttagtccataagctactctgttttcctgtaa 21989727  T
Q  180 atagagctcatttgtaa 196  Q
     ||| ||||||||||||    
T  21989726 ctagggctcatttgtaa 21989710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 79 - 147
Target Start/End: Original strand, 44655599 - 44655667
Alignment:
Q  79 gttataaatattaatagtggatgtccaaatagcaaatgtgttagtggatcatactattaggttattggg 147  Q
    ||||| |||||||  |||||||||||| ||||||| || |||| ||||||||||| |||| ||||||||    
T  44655599 gttatgaatattacaagtggatgtccatatagcaattgggttattggatcatactgttagcttattggg 44655667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 79 - 148
Target Start/End: Original strand, 16648423 - 16648492
Alignment:
Q  79 gttataaatattaatagtggatgtccaaatagcaaatgtgttagtggatcatactattaggttattgggc 148  Q
    ||||| |||||||  |||||||||||| ||||||| || |||| ||||||||| | |||| |||||||||    
T  16648423 gttatgaatattacaagtggatgtccatatagcaattgggttattggatcatattgttagcttattgggc 16648492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 79 - 148
Target Start/End: Original strand, 17622784 - 17622853
Alignment:
Q  79 gttataaatattaatagtggatgtccaaatagcaaatgtgttagtggatcatactattaggttattgggc 148  Q
    ||||| |||||||  |||||||||||| ||||||| || |||| ||||||||| | |||| |||||||||    
T  17622784 gttatgaatattacaagtggatgtccatatagcaattgggttattggatcatattgttagcttattgggc 17622853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 79 - 148
Target Start/End: Complemental strand, 42167780 - 42167711
Alignment:
Q  79 gttataaatattaatagtggatgtccaaatagcaaatgtgttagtggatcatactattaggttattgggc 148  Q
    ||||| |||||||  |||||||||||| ||||||| || |||| | ||||||||| |||| |||||||||    
T  42167780 gttatgaatattaccagtggatgtccatatagcaattgagttatttgatcatactgttagtttattgggc 42167711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0102 (Bit Score: 124; Significance: 7e-64; HSPs: 1)
Name: scaffold0102
Description:

Target: scaffold0102; HSP #1
Raw Score: 124; E-Value: 7e-64
Query Start/End: Original strand, 79 - 253
Target Start/End: Original strand, 14026 - 14198
Alignment:
Q  79 gttataaatattaatagtggatgtccaaatagcaaatgtgttagtggatcatactattaggttattgggcttaattcataagctactctatttccctata 178  Q
    ||||||||||||||||||||||||||||||||||||||||||||||   ||||||| |||||||||| ||||| ||||||||||||||||||||||||||    
T  14026 gttataaatattaatagtggatgtccaaatagcaaatgtgttagtgagccatactactaggttattgagcttagttcataagctactctatttccctata 14125  T
Q  179 aatagagctcatttgtaacattgagatatacacattagtgaataagaatactgatcctattctctctgcttctcc 253  Q
    |||||||||||||||||||||||||  | |||||| ||||||||||||||||| ||||||||||||| |||||||    
T  14126 aatagagctcatttgtaacattgag--agacacatcagtgaataagaatactgctcctattctctcttcttctcc 14198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0079 (Bit Score: 119; Significance: 7e-61; HSPs: 1)
Name: scaffold0079
Description:

Target: scaffold0079; HSP #1
Raw Score: 119; E-Value: 7e-61
Query Start/End: Original strand, 79 - 253
Target Start/End: Original strand, 57940 - 58114
Alignment:
Q  79 gttataaatattaatagtggatgtccaaatagcaaatgtgttagtggatcatactattaggttattgggcttaattcataagctactctatttccctata 178  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||  ||||||| |||||||||||||||| ||||||||||||| ||||| | ||||    
T  57940 gttataaatattaatagtggatgtccaaatagcaaatgtgttattgggccatactactaggttattgggcttagttcataagctactatattttcttata 58039  T
Q  179 aatagagctcatttgtaacattgagatatacacattagtgaataagaatactgatcctattctctctgcttctcc 253  Q
    |||||||||||||||||||||||||||| |||||||| |||||||||||| || ||||||| ||||| |||||||    
T  58040 aatagagctcatttgtaacattgagatacacacattattgaataagaatattgttcctattatctcttcttctcc 58114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 116; Significance: 4e-59; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 79 - 253
Target Start/End: Original strand, 18738574 - 18738746
Alignment:
Q  79 gttataaatattaatagtggatgtccaaatagcaaatgtgttagtggatcatactattaggttattgggcttaattcataagctactctatttccctata 178  Q
    |||||||||||||||||||||||||||||||||||||||||||||||  ||||||| |||||||||||||||| ||||||||||||||||||| ||||||    
T  18738574 gttataaatattaatagtggatgtccaaatagcaaatgtgttagtgggccatactactaggttattgggcttagttcataagctactctatttacctata 18738673  T
Q  179 aatagagctcatttgtaacattgagatatacacattagtgaataagaatactgatcctattctctctgcttctcc 253  Q
    |||||||||||||||||||||||||  | |||| | ||| ||||||||||||| ||||||| ||||| |||||||    
T  18738674 aatagagctcatttgtaacattgag--agacacgtcagtaaataagaatactgctcctattttctcttcttctcc 18738746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 79 - 228
Target Start/End: Original strand, 23427483 - 23427627
Alignment:
Q  79 gttataaatattaatagtggatgtccaaatagcaaatgtgttagtggatcatactattaggttattgggcttaattcataagctactctatttccctata 178  Q
    |||||||||||||||| | ||||||||||||||||||||||||||||| ||||||| |||||| ||||||||| ||||||||||||||||||||||||||    
T  23427483 gttataaatattaatatttgatgtccaaatagcaaatgtgttagtggaccatactactaggtt-ttgggcttagttcataagctactctatttccctata 23427581  T
Q  179 aatagagctcatttgtaacattgagatatacacattagtgaataagaata 228  Q
    |||||||||||||||||||||||    ||||||| |||| ||||||||||    
T  23427582 aatagagctcatttgtaacattg----atacacactagttaataagaata 23427627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 79 - 252
Target Start/End: Complemental strand, 33661051 - 33660877
Alignment:
Q  79 gttataaatattaatagtggatgtccaaatagcaaatgtgttagtggatcatactattaggttattgggcttaattcataagctactctatttccctata 178  Q
    |||||||||||||||||||||||||||||||||||||  |||  |||  |||| || |||||||||||||||| ||||||||||||||||||| | ||||    
T  33661051 gttataaatattaatagtggatgtccaaatagcaaataggtttatgggccatattactaggttattgggcttagttcataagctactctattttcttata 33660952  T
Q  179 aatagagctcatttgtaacattgagatatacacattagtgaataagaatactgatcc-tattctctctgcttctc 252  Q
    ||||||| |||||||||||||||||||| ||||||  ||||||||||||| |  ||| |||||||||| ||||||    
T  33660951 aatagagttcatttgtaacattgagatacacacatcggtgaataagaatatttctccttattctctcttcttctc 33660877  T

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Target: chr6; HSP #4
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 79 - 228
Target Start/End: Original strand, 23421637 - 23421781
Alignment:
Q  79 gttataaatattaatagtggatgtccaaatagcaaatgtgttagtggatcatactattaggttattgggcttaattcataagctactctatttccctata 178  Q
    |||||||||||||||| | |||||||||||||||||||||||||||||  |||||| |||||| ||||||||| |||||||| |||||||||||||||||    
T  23421637 gttataaatattaatatttgatgtccaaatagcaaatgtgttagtggactatactactaggtt-ttgggcttagttcataagttactctatttccctata 23421735  T
Q  179 aatagagctcatttgtaacattgagatatacacattagtgaataagaata 228  Q
    |||||||||||||||||||||||    ||||||| |||| ||||||||||    
T  23421736 aatagagctcatttgtaacattg----atacacactagttaataagaata 23421781  T

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Target: scaffold0591 (Bit Score: 106; Significance: 4e-53; HSPs: 1)
Name: scaffold0591
Description:

Target: scaffold0591; HSP #1
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 79 - 252
Target Start/End: Original strand, 9324 - 9496
Alignment:
Q  79 gttataaatattaatagtggatgtccaaatagcaaatgtgttagtggatcatactattaggttattgggcttaattcataagctactctatttccctata 178  Q
    ||||||||||||||||||||||||||||||||||||||| ||| |||  ||||||| |||||||||||||||| ||||||||||||||||||| | ||||    
T  9324 gttataaatattaatagtggatgtccaaatagcaaatgtattattgggccatactactaggttattgggcttagttcataagctactctattttcttata 9423  T
Q  179 aatagagctcatttgtaacattgagatatacacattagtgaataagaatactgatcctattctctctgcttctc 252  Q
    ||||||||||||||||||||||| |||| |||||| | |||||||||||| |  ||||||||||||| ||||||    
T  9424 aatagagctcatttgtaacattgggatacacacatca-tgaataagaatatttctcctattctctcttcttctc 9496  T

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Target: scaffold0258 (Bit Score: 71; Significance: 3e-32; HSPs: 1)
Name: scaffold0258
Description:

Target: scaffold0258; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 80 - 253
Target Start/End: Complemental strand, 6435 - 6264
Alignment:
Q  80 ttataaatattaatagtggatgtccaaatagcaaatgtgttagtggatcatactattaggttattgggcttaattcataagctactctatttccctataa 179  Q
    ||||||||||||| ||||||||||||||||||||||   ||  |||   |||| | |||||||||||||||| ||||||||||||||||||||||| |||    
T  6435 ttataaatattaacagtggatgtccaaatagcaaataaatttatgggctatacgaataggttattgggcttagttcataagctactctatttccctgtaa 6336  T
Q  180 atagagctcatttgtaacattgagatatacacattagtgaataagaatactgatcctattctctctgcttctcc 253  Q
    ||||| |||| |||||||| ||||  ||   ||| |||||||||||||| || ||||||||||||| |||||||    
T  6335 atagaactcaattgtaacagtgagtgat--gcatcagtgaataagaatattgctcctattctctcttcttctcc 6264  T

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Target: scaffold0004 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: scaffold0004
Description:

Target: scaffold0004; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 79 - 148
Target Start/End: Complemental strand, 345830 - 345761
Alignment:
Q  79 gttataaatattaatagtggatgtccaaatagcaaatgtgttagtggatcatactattaggttattgggc 148  Q
    ||||| |||||||  |||||||||||| ||||||| || |||| ||||||||| | |||| |||||||||    
T  345830 gttatgaatattacaagtggatgtccatatagcaattgggttattggatcatattgttagcttattgggc 345761  T

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Target: scaffold0211 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0211
Description:

Target: scaffold0211; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 79 - 147
Target Start/End: Original strand, 26904 - 26972
Alignment:
Q  79 gttataaatattaatagtggatgtccaaatagcaaatgtgttagtggatcatactattaggttattggg 147  Q
    ||||| |||||||  |||||||||||| ||||||| || |||| ||||||||| | |||| ||||||||    
T  26904 gttatgaatattacaagtggatgtccatatagcaattgggttattggatcatattgttagcttattggg 26972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0169 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0169
Description:

Target: scaffold0169; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 79 - 147
Target Start/End: Original strand, 8696 - 8764
Alignment:
Q  79 gttataaatattaatagtggatgtccaaatagcaaatgtgttagtggatcatactattaggttattggg 147  Q
    ||||| |||||||  |||||||||| | ||||||| || |||| ||| |||||||||||| ||||||||    
T  8696 gttatgaatattataagtggatgtctatatagcaattgggttattgggtcatactattagcttattggg 8764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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