View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9917_high_17 (Length: 254)
Name: NF9917_high_17
Description: NF9917
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9917_high_17 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 207; Significance: 1e-113; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 20 - 242
Target Start/End: Complemental strand, 7798193 - 7797971
Alignment:
| Q |
20 |
aacgtgaactaattaatttaagatttattctaattacacccatgaaatttcggttacactccaatttaacaaaaatacccttcaaccctttttaaatggc |
119 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
7798193 |
aacgtgaactaattaatttaagatttattctaattacacccatgaaatttcggttacactccaatttaacaaaaacacccttcaaccctttttaaatggc |
7798094 |
T |
|
| Q |
120 |
ttatggaatttgtttagcatatagaagcataatcactcgaataccaccgtatcactaattcaatacaaatcacttacgggaatttgaaaaaagatatcat |
219 |
Q |
| |
|
||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
7798093 |
ttatggaatttgtttagtatatggaagcataatcactcgaataccaccgtatcactaattcaatacaaatcacttacgggaattggaaaaaagatatcat |
7797994 |
T |
|
| Q |
220 |
ggaagaattttcttctccacctt |
242 |
Q |
| |
|
||||||||||||||||||||||| |
|
|
| T |
7797993 |
ggaagaattttcttctccacctt |
7797971 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 20 - 242
Target Start/End: Complemental strand, 7817463 - 7817241
Alignment:
| Q |
20 |
aacgtgaactaattaatttaagatttattctaattacacccatgaaatttcggttacactccaatttaacaaaaatacccttcaaccctttttaaatggc |
119 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
7817463 |
aacgtgaactaattaatttaagatttattctaattacacccatgaaatttcggttacactccaatttaacaaaaacacccttcaaccctttttaaatggc |
7817364 |
T |
|
| Q |
120 |
ttatggaatttgtttagcatatagaagcataatcactcgaataccaccgtatcactaattcaatacaaatcacttacgggaatttgaaaaaagatatcat |
219 |
Q |
| |
|
||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
7817363 |
ttatggaatttgtttagtatatggaagcataatcactcgaataccaccgtatcactaattcaatacaaatcacttacgggaattggaaaaaagatatcat |
7817264 |
T |
|
| Q |
220 |
ggaagaattttcttctccacctt |
242 |
Q |
| |
|
||||||||||||||||||||||| |
|
|
| T |
7817263 |
ggaagaattttcttctccacctt |
7817241 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 194 - 242
Target Start/End: Complemental strand, 21539826 - 21539777
Alignment:
| Q |
194 |
tacgggaatttgaaaaaag-atatcatggaagaattttcttctccacctt |
242 |
Q |
| |
|
|||||||||| |||||||| | ||||| |||||||||||||||||||||| |
|
|
| T |
21539826 |
tacgggaattggaaaaaaggaaatcatagaagaattttcttctccacctt |
21539777 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 194 - 242
Target Start/End: Original strand, 20637114 - 20637163
Alignment:
| Q |
194 |
tacgggaatttgaaaaaag-atatcatggaagaattttcttctccacctt |
242 |
Q |
| |
|
|||||||||| |||||||| | ||||| |||||||||||||||||||||| |
|
|
| T |
20637114 |
tacgggaattggaaaaaaggaaatcatagaagaattttcttctccacctt |
20637163 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University