View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9917_high_19 (Length: 250)
Name: NF9917_high_19
Description: NF9917
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9917_high_19 |
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Alignment Details
Target: chr5 (Bit Score: 199; Significance: 1e-108; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 1 - 246
Target Start/End: Complemental strand, 27715086 - 27714828
Alignment:
| Q |
1 |
tgttttccttttaggtgtaaatcatggtgtttaagtagagctcttcctttttgtatcttaaggatatttggtgtatttttgtacatcttgttttagcaaa |
100 |
Q |
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| T |
27715086 |
tgttttccttttaggtgtaaatcatggtgtgtaagtagagctcttcctttttgtatcttaaggatatttggtgtatttttgtacatcttgttttagcaaa |
27714987 |
T |
|
| Q |
101 |
aaactagtaacaccttatcacgaggaatcttagaactttgaagtagggtt-------------taattgccttcgttatttccattccatcattctcttg |
187 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||| |
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| T |
27714986 |
taactagtaacaccttatcacgaggaatcttagaactttgaagtagggcttatattattgacataattgccttcgttatttccattccatcattctcttg |
27714887 |
T |
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| Q |
188 |
cttatttctcttagaatcattcattaccattaggagaactctaataacctttgctactc |
246 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
27714886 |
cttatttctcttagaatcattcattaccattaggagaactctaataacctttgttactc |
27714828 |
T |
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Target: chr3 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 32 - 100
Target Start/End: Original strand, 44754122 - 44754190
Alignment:
| Q |
32 |
taagtagagctcttcctttttgtatcttaaggatatttggtgtatttttgtacatcttgttttagcaaa |
100 |
Q |
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|||||||||||||| |||||||||||| |||||||||||||||| |||||||||||| ||||||||||| |
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| T |
44754122 |
taagtagagctctttctttttgtatctgaaggatatttggtgtagttttgtacatctagttttagcaaa |
44754190 |
T |
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