View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9917_high_2 (Length: 469)
Name: NF9917_high_2
Description: NF9917
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9917_high_2 |
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Alignment Details
Target: chr5 (Bit Score: 311; Significance: 1e-175; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 137 - 455
Target Start/End: Original strand, 8751779 - 8752097
Alignment:
| Q |
137 |
gcttgcacatggtttatacgctggtgtagtagttaaagggcttatatacatactgtatgatgtagttgtgacgatttgatagatcacctttgcttacaca |
236 |
Q |
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| T |
8751779 |
gcttgcacatggtttatacgctggtgtagtagttaaagggcttatatacatactgtatgatgtagttgtgacgatttgatagatcacctttgcttacaca |
8751878 |
T |
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| Q |
237 |
ttacacaaaaaatttccaaaatgaaaagcgcagaaaattacagaacagttataattattgatgattagttgaacaaacggatccttccgaagaaattaac |
336 |
Q |
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| T |
8751879 |
ttacacaaaaaatttccaaaatgaaaagcgcagaaaattacagaacagttataattattgatgattagttaaacaaacggatccttccgaagaaattaac |
8751978 |
T |
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| Q |
337 |
aaatggacaagacaaatgactacatcaaggctacgatcgatctataaccataataagtactggtcctcgaattaaattgtatttttgggagaagtgagag |
436 |
Q |
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| T |
8751979 |
aaatggacaagacaaatgactacatcaaggctacgatcgatctataaccataataagtactggtccttgaattaaattgtatttttgggagaagtgagag |
8752078 |
T |
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| Q |
437 |
tgaaatgaaagaaatatac |
455 |
Q |
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| T |
8752079 |
tgaaatgaaagaaatatac |
8752097 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 1 - 114
Target Start/End: Original strand, 8751630 - 8751743
Alignment:
| Q |
1 |
atggataagggaaaaagaatttgccccactgctctagtttatactattttctctctcagtccttaaactacgaaacaaaagattttgataaataaagtaa |
100 |
Q |
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| T |
8751630 |
atggataagggaaaaagaatttgccccactactctagtttatactattttctctctcagtccttaagctacgaaacaaaagattttgataaataaagtaa |
8751729 |
T |
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| Q |
101 |
cgtatatgccatgc |
114 |
Q |
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| T |
8751730 |
cgtatatgtcatgc |
8751743 |
T |
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