View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9917_high_3 (Length: 434)
Name: NF9917_high_3
Description: NF9917
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9917_high_3 |
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Alignment Details
Target: chr2 (Bit Score: 334; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 334; E-Value: 0
Query Start/End: Original strand, 14 - 419
Target Start/End: Original strand, 31451182 - 31451600
Alignment:
| Q |
14 |
caaactcaaccaaaatctctcaacctcctccaccacttccctttcagaaatctcttgtcctacgtgtgagaagtcgaccctcttgccctttttctctgcg |
113 |
Q |
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| T |
31451182 |
caaactcaaccaaaatctctcaacctcgtccaccacttccctttcagaaatctcttgtcctacgtgtgagaagtcgaccctcttgccctttttctctgcg |
31451281 |
T |
|
| Q |
114 |
tacaaatcctccatcctctaccatcttccattcaagattcaagccaccaatatcccttttccagcctacatcaatctcaaaacaaccactaat------- |
206 |
Q |
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| T |
31451282 |
tacaaatcctccatcctctaccatcttccattcaagattcaagccaccaatatcccttttccagcctacatcaatctcaaaacaaccactaattttaatg |
31451381 |
T |
|
| Q |
207 |
----gtgatgaatttcatgaatcaaatttttagggttttgggaattttaatttggcaaaatagcgatgtgatgtcagtattaatgaataggtcgtgggaa |
302 |
Q |
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| T |
31451382 |
agtattaatgaatagcatgaatcaaatttttagggttttgggaattttaatttggcaaaatagcgattttttgtcagtattaatgaataggtcgtgggaa |
31451481 |
T |
|
| Q |
303 |
acaatgttttttgggattattgtgtttggtgtaacattttagataggcaaataacggaa--ttaacatgaattataatccaaatctaattttaatgagtt |
400 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
31451482 |
acaatgttttttgggattattgtgtttggtgtaacattttagataggcaaataacggaattttaacatgaattataatccaaatctaattttaatgagtt |
31451581 |
T |
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| Q |
401 |
taattttgatacatattct |
419 |
Q |
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|||||||||||||||||| |
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| T |
31451582 |
caattttgatacatattct |
31451600 |
T |
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