View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9917_high_6 (Length: 351)
Name: NF9917_high_6
Description: NF9917
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9917_high_6 |
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Alignment Details
Target: chr8 (Bit Score: 270; Significance: 1e-151; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 270; E-Value: 1e-151
Query Start/End: Original strand, 7 - 332
Target Start/End: Complemental strand, 40669776 - 40669451
Alignment:
| Q |
7 |
ttggtggtgatagttatgagtggtggcagactttaaacacatttcttcaatccttcttttcgattaagcctatgtagattgtgatgattctgattgaaaa |
106 |
Q |
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|||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
40669776 |
ttggtggtgatagttatgggtggtggcagactttaaacacatttctttaatccttcttttcgattaagcctatgtagattgtgatgattctgattgagaa |
40669677 |
T |
|
| Q |
107 |
caccaccaataaaggactatatgatcctcaaagcggtgtctcccatacgttttcagccgcctgttagaacttatatttccattagactttgatgtggcag |
206 |
Q |
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||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||| | |||||||||| |
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| T |
40669676 |
caccaccaaaaaaggactatatgatcctcaaagcggtgtctcccacacgttttcagccgcctgttagaacttacatttccattagacgtcgatgtggcag |
40669577 |
T |
|
| Q |
207 |
tggaggaggcacatgaatgttttccattttgtggcagagacggagggagtcggagagctggggaatcacacggtgtagatccaaccctgcggcgtgacga |
306 |
Q |
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||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| || |||||||||| ||||||||||||||| ||||||||| || |
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| T |
40669576 |
tggaggaggcacatgaatgttttccgttttgtggcagagacggagggagtcggagaggtgaggaatcacacagtgtagatccaacccggcggcgtgaaga |
40669477 |
T |
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| Q |
307 |
agatcatggtaagggatagtgatcgt |
332 |
Q |
| |
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|||||||||||||||||||||||||| |
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| T |
40669476 |
agatcatggtaagggatagtgatcgt |
40669451 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 270; Significance: 1e-151; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 270; E-Value: 1e-151
Query Start/End: Original strand, 7 - 332
Target Start/End: Original strand, 17056075 - 17056400
Alignment:
| Q |
7 |
ttggtggtgatagttatgagtggtggcagactttaaacacatttcttcaatccttcttttcgattaagcctatgtagattgtgatgattctgattgaaaa |
106 |
Q |
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|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| || |
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| T |
17056075 |
ttggtggtgatagttatgggtggtggcagactttaaacacatttcttcaatccttcttttcgattaagcctatgtagattgtgatgactctgattgagaa |
17056174 |
T |
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| Q |
107 |
caccaccaataaaggactatatgatcctcaaagcggtgtctcccatacgttttcagccgcctgttagaacttatatttccattagactttgatgtggcag |
206 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||| ||||||||||||| |||||||||| |
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| T |
17056175 |
caccaccaataaaggactatatgatcctcaaagcggtgtctcccacacgttttcagccacctgttagaacttacatttccattagacgccgatgtggcag |
17056274 |
T |
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| Q |
207 |
tggaggaggcacatgaatgttttccattttgtggcagagacggagggagtcggagagctggggaatcacacggtgtagatccaaccctgcggcgtgacga |
306 |
Q |
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||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||| || |||||||||||||||||||||||||| |||||||||||| |
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| T |
17056275 |
tggaggaggcacatgaatgttttccgttttgtggcagagacagagggagtcggagaggtgaggaatcacacggtgtagatccaacccggcggcgtgacga |
17056374 |
T |
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| Q |
307 |
agatcatggtaagggatagtgatcgt |
332 |
Q |
| |
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|||||||||||||||||||||||||| |
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| T |
17056375 |
agatcatggtaagggatagtgatcgt |
17056400 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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