View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9917_high_8 (Length: 338)
Name: NF9917_high_8
Description: NF9917
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9917_high_8 |
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Alignment Details
Target: chr8 (Bit Score: 322; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 322; E-Value: 0
Query Start/End: Original strand, 1 - 326
Target Start/End: Complemental strand, 29113439 - 29113114
Alignment:
| Q |
1 |
tctttatatattaacaccaaactagaattttctatgtaagagaaatttccgatcataacttcaaaactttcttcaatagtctatagatcatatggaggaa |
100 |
Q |
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| T |
29113439 |
tctttatatattaacaccaaactagaattttctatgtaagagaaatttccgatcataacttcaaatctttcttcaatagtctatagatcatatggaggaa |
29113340 |
T |
|
| Q |
101 |
aatgatacacaaacctacccactcctcacaccattaaacaaccaacaacatgatcaaatcaacactgctgtattcacagctaaatccgatgatatttctc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29113339 |
aatgatacacaaacctacccactcctcacaccattaaacaaccaacaacatgatcaaatcaacactgctgtattcacagctaaatccgatgatatttctc |
29113240 |
T |
|
| Q |
201 |
cgatcaccggtgccggagactttgccagagaatttctcaatgagtctaaaaaactttggtaccttgctggacctgctatcttcacctccatctctcaata |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29113239 |
cgatcaccggtgccggagactttgccagagaatttctcaatgagtctaaaaaactttggtaccttgctggacctgctatcttcacctccatctctcaata |
29113140 |
T |
|
| Q |
301 |
ttctcttggtgctgttactcaagtct |
326 |
Q |
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|||||||||||||||||||||||||| |
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| T |
29113139 |
ttctcttggtgctgttactcaagtct |
29113114 |
T |
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