View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9917_low_1 (Length: 534)

Name: NF9917_low_1
Description: NF9917
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9917_low_1
NF9917_low_1
[»] chr3 (1 HSPs)
chr3 (17-523)||(14550781-14551287)
[»] chr5 (12 HSPs)
chr5 (17-468)||(37528258-37528704)
chr5 (17-468)||(37692708-37693154)
chr5 (17-162)||(37590450-37590593)
chr5 (369-468)||(37590754-37590850)
chr5 (19-84)||(37828560-37828624)
chr5 (19-83)||(37536516-37536579)
chr5 (19-83)||(37597666-37597729)
chr5 (19-83)||(37645634-37645697)
chr5 (19-83)||(37721359-37721422)
chr5 (199-254)||(37590597-37590653)
chr5 (22-93)||(37621055-37621130)
chr5 (22-93)||(37796852-37796927)


Alignment Details
Target: chr3 (Bit Score: 503; Significance: 0; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 503; E-Value: 0
Query Start/End: Original strand, 17 - 523
Target Start/End: Original strand, 14550781 - 14551287
Alignment:
Q  17 tcttcttgccaccaaattattggattataatgcatattgatcggctacattttcttttcatttgtggagagttgtttaaagacattttatcgtagagttt 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14550781 tcttcttgccaccaaattattggattataatgcatattgatcggctacattttcttttcatttgtggagagttgtttaaagacattttatcgtagagttt 14550880  T
Q  117 gcttatcttacaattgtgtaatatagatggtttagcctagtatgtggtggttggtgcaaaagtagttttcaaccatcatatgtgatgtatttcaatcaaa 216  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14550881 gcttatcttacaattgtgtaatatagatggtttagcctagtatgtggtggttggtgcaaaagtagttttcaaccatcatatgtgatgtatttcaatcaaa 14550980  T
Q  217 cggcaacgatacagcaacgataaacaacttgttatttgcaatttcgccctgattcttcttagttccatgcttgttcaactttgacaatccaacttttgaa 316  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14550981 cggcaatgatacagcaacgataaacaacttgttatttgcaatttcgccctgattcttcttagttccatgcttgttcaactttgacaatccaacttttgaa 14551080  T
Q  317 gggtttcataattcccttaagtttaaggtctgtagtgcctcaatcatcaatcaataatggtggcaattggggctccccaacatcaattctcaaagacaaa 416  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14551081 gggtttcataattcccttaagtttaaggtctgtagtgcctcaatcatcaatcaataatggtggcaattggggctccccaacatcaattctcaaagacaaa 14551180  T
Q  417 ttcgcacgcgcacaaaaagtagaaggaaggcatttggcacaccaccattgtgtcgaccacaatccgtgtttggacacaaggatttgaacgttaggagctc 516  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14551181 ttcgcacgcgcacaaaaagtagaaggaaggcatttggcacaccaccattgtgtcgaccacaatccgtgtttggacacaaggatttgaacgttaggagctc 14551280  T
Q  517 tattctt 523  Q
    |||||||    
T  14551281 tattctt 14551287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 199; Significance: 1e-108; HSPs: 12)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 17 - 468
Target Start/End: Original strand, 37528258 - 37528704
Alignment:
Q  17 tcttcttgccaccaaattattggattataatgcatattgatcggctacattttcttttcatttgtggagagttgtttaaagacattttatcgtagagttt 116  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||    
T  37528258 tcttcttgccaccaaattattggattataatgcatattgatcggctacattttcttttcatttgtggagagttgtttaaagacattttattgaagagttt 37528357  T
Q  117 gcttatcttacaattgtgtaatatagatggtttagcctagtatgtggtggttggtgcaaaagtagttttcaaccatcatatg---tgatgtatttcaatc 213  Q
    ||||||||||||||||||||  |||||||||| |||||||||||||||| |||||||||||||||||||| |||||||| ||   |||||||||||||||    
T  37528358 gcttatcttacaattgtgta--atagatggttcagcctagtatgtggtgcttggtgcaaaagtagttttcgaccatcatgtgtgatgatgtatttcaatc 37528455  T
Q  214 aaac-ggcaacgatacagcaacgataaacaacttgttatttgcaatttcgcc-ctgattcttcttagttcc--atgcttgttcaactttgacaatccaac 309  Q
    |||| ||||| |||||||||| || ||||||||||||||||| || || ||| | |||||||||||||| |  ||||||||||||||||| | | |||||    
T  37528456 aaactggcaatgatacagcaatgaaaaacaacttgttatttgtaacttggcctccgattcttcttagttacatatgcttgttcaactttggcgagccaac 37528555  T
Q  310 ttttgaa-----gggtttcataattcccttaagtttaaggtctgtagtgcctcaatcatcaatcaataatggtggcaattggggctccccaacatcaatt 404  Q
    |||||||     ||||||  |||||||||   | | | ||| || |||||||||||        ||||||| ||||||||||||| ||||||||||| ||    
T  37528556 ttttgaaaccttgggttttgtaattccct---gatgagggtttgcagtgcctcaat--------aataatgatggcaattggggc-ccccaacatcattt 37528643  T
Q  405 ctcaaagacaaattcgcacgcgcacaaaaagtagaaggaaggcatttggcacaccaccattgtg 468  Q
    || | |||| || ||||||| ||||   |||||||||||||||||||||||||| |||||||||    
T  37528644 ctgagagacgaactcgcacgtgcac---aagtagaaggaaggcatttggcacactaccattgtg 37528704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 17 - 468
Target Start/End: Original strand, 37692708 - 37693154
Alignment:
Q  17 tcttcttgccaccaaattattggattataatgcatattgatcggctacattttcttttcatttgtggagagttgtttaaagacattttatcgtagagttt 116  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||    
T  37692708 tcttcttgccaccaaattattggattataatgcatattgatcggctacattttcttttcatttgtggagagttgtttaaagacattttattgaagagttt 37692807  T
Q  117 gcttatcttacaattgtgtaatatagatggtttagcctagtatgtggtggttggtgcaaaagtagttttcaaccatcatatg---tgatgtatttcaatc 213  Q
    ||||||||||||||||||||  |||||||||| |||||||||||||||| |||||||||||||||||||| |||||||| ||   |||||||||||||||    
T  37692808 gcttatcttacaattgtgta--atagatggttcagcctagtatgtggtgcttggtgcaaaagtagttttcgaccatcatgtgtgatgatgtatttcaatc 37692905  T
Q  214 aaac-ggcaacgatacagcaacgataaacaacttgttatttgcaatttcgcc-ctgattcttcttagttcc--atgcttgttcaactttgacaatccaac 309  Q
    |||| ||||| |||||||||| || ||||||||||||||||| || || ||| | |||||||||||||| |  ||||||||| ||||||| | | |||||    
T  37692906 aaactggcaatgatacagcaatgaaaaacaacttgttatttgtaacttggcctccgattcttcttagttacatatgcttgtttaactttggcgagccaac 37693005  T
Q  310 ttttgaa-----gggtttcataattcccttaagtttaaggtctgtagtgcctcaatcatcaatcaataatggtggcaattggggctccccaacatcaatt 404  Q
    |||||||     ||||||  |||||||||   | | | ||| || |||||||||||        ||||||| ||||||||||||| ||||||||||| ||    
T  37693006 ttttgaaaccttgggttttgtaattccct---gatgagggtttgcagtgcctcaat--------aataatgatggcaattggggc-ccccaacatcattt 37693093  T
Q  405 ctcaaagacaaattcgcacgcgcacaaaaagtagaaggaaggcatttggcacaccaccattgtg 468  Q
    || |||||| || ||||||  ||||   |||||||||||||||||||||||||| |||||||||    
T  37693094 ctgaaagacgaactcgcacatgcac---aagtagaaggaaggcatttggcacactaccattgtg 37693154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 115; E-Value: 4e-58
Query Start/End: Original strand, 17 - 162
Target Start/End: Original strand, 37590450 - 37590593
Alignment:
Q  17 tcttcttgccaccaaattattggattataatgcatattgatcggctacattttcttttcatttgtggagagttgtttaaagacattttatcgtagagttt 116  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||| | |||||||    
T  37590450 tcttcttgccaccaaattattggattataatgcatattgatcggctacattttcttttcatttgtaaagagttgtttaaagacattttattgaagagttt 37590549  T
Q  117 gcttatcttacaattgtgtaatatagatggtttagcctagtatgtg 162  Q
    ||||||||||||||||||||  |||||||||| |||||||||||||    
T  37590550 gcttatcttacaattgtgta--atagatggttcagcctagtatgtg 37590593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 369 - 468
Target Start/End: Original strand, 37590754 - 37590850
Alignment:
Q  369 aataatggtggcaattggggctccccaacatcaattctcaaagacaaattcgcacgcgcacaaaaagtagaaggaaggcatttggcacaccaccattgtg 468  Q
    ||||||| ||||||||||||| ||||||||||| |||| |||||| || ||||||  ||||||   |||||||||||||||||||||||| |||||||||    
T  37590754 aataatgatggcaattggggccccccaacatcatttctgaaagacgaactcgcacatgcacaa---gtagaaggaaggcatttggcacactaccattgtg 37590850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 19 - 84
Target Start/End: Original strand, 37828560 - 37828624
Alignment:
Q  19 ttcttgccaccaaattattggattataatgcatattgatcggctacattttcttttcatttgtgga 84  Q
    |||||||||||||||||| ||||| ||||||||||| || |||||| ||||||||| |||||||||    
T  37828560 ttcttgccaccaaattataggattttaatgcatattaat-ggctactttttcttttaatttgtgga 37828624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 19 - 83
Target Start/End: Original strand, 37536516 - 37536579
Alignment:
Q  19 ttcttgccaccaaattattggattataatgcatattgatcggctacattttcttttcatttgtgg 83  Q
    |||||||||||||||||| ||||| ||||||||||| || |||||| ||||||||| ||||||||    
T  37536516 ttcttgccaccaaattataggattttaatgcatattaat-ggctactttttcttttaatttgtgg 37536579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 19 - 83
Target Start/End: Original strand, 37597666 - 37597729
Alignment:
Q  19 ttcttgccaccaaattattggattataatgcatattgatcggctacattttcttttcatttgtgg 83  Q
    |||||||||||||||||| ||||| ||||||||||| || |||||| ||||||||| ||||||||    
T  37597666 ttcttgccaccaaattataggattttaatgcatattaat-ggctactttttcttttaatttgtgg 37597729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 19 - 83
Target Start/End: Original strand, 37645634 - 37645697
Alignment:
Q  19 ttcttgccaccaaattattggattataatgcatattgatcggctacattttcttttcatttgtgg 83  Q
    |||||||||||||||||| ||||| ||||||||||| || |||||| ||||||||| ||||||||    
T  37645634 ttcttgccaccaaattataggattttaatgcatattaat-ggctactttttcttttaatttgtgg 37645697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 19 - 83
Target Start/End: Original strand, 37721359 - 37721422
Alignment:
Q  19 ttcttgccaccaaattattggattataatgcatattgatcggctacattttcttttcatttgtgg 83  Q
    |||||||||||||||||| ||||| ||||||||||| || |||||| ||||||||| ||||||||    
T  37721359 ttcttgccaccaaattataggattttaatgcatattaat-ggctactttttcttttaatttgtgg 37721422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 199 - 254
Target Start/End: Original strand, 37590597 - 37590653
Alignment:
Q  199 tgatgtatttcaatcaaac-ggcaacgatacagcaacgataaacaacttgttatttg 254  Q
    ||||||||||||||||||| ||||| | |||||||| || |||||||||||||||||    
T  37590597 tgatgtatttcaatcaaactggcaatggtacagcaatgaaaaacaacttgttatttg 37590653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 22 - 93
Target Start/End: Original strand, 37621055 - 37621130
Alignment:
Q  22 ttgccaccaaattattggattataatgcatattgatcg----gctacattttcttttcatttgtggagagttgttt 93  Q
    ||||||||||||||| ||||| ||| |||||||||| |    |||||||||| |||  ||||||||||||||||||    
T  37621055 ttgccaccaaattataggattttaaggcatattgattgattggctacattttgtttaaatttgtggagagttgttt 37621130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 22 - 93
Target Start/End: Original strand, 37796852 - 37796927
Alignment:
Q  22 ttgccaccaaattattggattataatgcatattgatcg----gctacattttcttttcatttgtggagagttgttt 93  Q
    ||||||||||||||| ||||| ||| |||||||||| |    |||||||||| |||  ||||||||||||||||||    
T  37796852 ttgccaccaaattataggattttaaggcatattgattgattggctacattttgtttaaatttgtggagagttgttt 37796927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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