View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9917_low_10 (Length: 357)

Name: NF9917_low_10
Description: NF9917
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9917_low_10
NF9917_low_10
[»] chr8 (7 HSPs)
chr8 (19-345)||(1360427-1360753)
chr8 (23-332)||(1349782-1350091)
chr8 (117-338)||(11366591-11366812)
chr8 (81-229)||(1343439-1343587)
chr8 (81-229)||(1356000-1356148)
chr8 (247-283)||(1353243-1353279)
chr8 (129-169)||(1353313-1353353)
[»] chr7 (2 HSPs)
chr7 (82-317)||(13589845-13590080)
chr7 (117-279)||(29389250-29389412)
[»] chr3 (1 HSPs)
chr3 (81-229)||(24617858-24618006)
[»] chr2 (2 HSPs)
chr2 (144-338)||(43369274-43369468)
chr2 (110-336)||(43365092-43365315)


Alignment Details
Target: chr8 (Bit Score: 315; Significance: 1e-177; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 315; E-Value: 1e-177
Query Start/End: Original strand, 19 - 345
Target Start/End: Complemental strand, 1360753 - 1360427
Alignment:
Q  19 aatcaatggctttaactgaaggttgtatgcagcatatgccagctcaaagaggttgtcagccactatcctaacaaattcctcatcatacaattttctttcc 118  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1360753 aatcaatggcttcaactgaaggttgtatgcagcatatgccagctcaaagaggttgtcagccactatcctaacaaattcctcatcatacaattttctttcc 1360654  T
Q  119 ttgtttgagtggccttgtatgtgatgaaatagacaataatcaagaattaagttcaacattgcaagacttactttttcaggaagaaatattgcagaactct 218  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  1360653 ttgtttgagtggccttgtatgtgatgaaatagacaataatcaagaattaagttcaacattgcaagacttactttttcaggaagacatattgcagaactct 1360554  T
Q  219 tggaagatcctgtccctttttctgatatttcttgacatataaaagggcaaaccattgcaatctctctatccactacttggattgaatcgtcacaagtttt 318  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1360553 tggaagatcctgtccctttttctgatatttcttgacatataaaagggcaaaccattgcaatctctctatccactacttggattgaatcgtcacaagtttt 1360454  T
Q  319 aagccatacataaggcttcaccgtctc 345  Q
    |||||||||||||||||||||| ||||    
T  1360453 aagccatacataaggcttcaccatctc 1360427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 23 - 332
Target Start/End: Complemental strand, 1350091 - 1349782
Alignment:
Q  23 aatggctttaactgaaggttgtatgcagcatatgccagctcaaagaggttgtcagccactatcctaacaaattcctcatcatacaattttctttccttgt 122  Q
    ||||||||||| |||||| | | ||||||| ||||||   |||||||  ||||||   ||||||||||||||| | ||||||||||||||||||||||||    
T  1350091 aatggctttaattgaaggctttttgcagcaaatgccaatgcaaagagtatgtcagggtctatcctaacaaatttcgcatcatacaattttctttccttgt 1349992  T
Q  123 ttgagtggccttgtatgtgatgaaatagacaataatcaagaattaagttcaacattgcaagacttactttttcaggaagaaatattgcagaactcttgga 222  Q
    | |||||||||||||||||||||||| ||||||||||||||||| || |||||| || | ||||||||| || ||||||| |||||| |||||||||| |    
T  1349991 tggagtggccttgtatgtgatgaaattgacaataatcaagaattgagctcaacaatgaaggacttacttgttgaggaagacatattggagaactcttgca 1349892  T
Q  223 agatcctgtccctttttctgatatttcttgacatataaaagggcaaaccattgcaatctctctatccactacttggattgaatcgtcacaagttttaagc 322  Q
    |||||| || ||||||| | ||||||||||  |||| |||||| ||| |||||||||||||  ||| |||  |||||||||| | |||||||||| ||||    
T  1349891 agatccagttcctttttgtaatatttcttgtaatatgaaaggggaaatcattgcaatctcttgatctacttgttggattgaaccatcacaagtttgaagc 1349792  T
Q  323 catacataag 332  Q
    || |||||||    
T  1349791 cacacataag 1349782  T

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Target: chr8; HSP #3
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 117 - 338
Target Start/End: Complemental strand, 11366812 - 11366591
Alignment:
Q  117 ccttgtttgagtggccttgtatgtgatgaaatagacaataatcaagaattaagttcaacattgcaagacttactttttcaggaagaaatattgcagaact 216  Q
    ||||||||||| ||||| |||  ||||||||| |||| ||||||||||||||| ||| ||||||| |||| |||| || ||||||| ||| |||| || |    
T  11366812 ccttgtttgagcggcctagtacttgatgaaatcgacagtaatcaagaattaagctcagcattgcaggactgacttgttgaggaagacatactgcacaatt 11366713  T
Q  217 cttggaagatcctgtccctttttctgatatttcttgacatataaaagggcaaaccattgcaatctctctatccactacttggattgaatcgtcacaagtt 316  Q
    |||||||| |||  | ||||||| | ||||||||||||||||||| || |||| ||| |||||||||   ||||||  ||||||||| || ||  |||||    
T  11366712 cttggaagttccattgcctttttgtaatatttcttgacatataaatggacaaaacatcgcaatctcttgttccacttgttggattgattcatcggaagtt 11366613  T
Q  317 ttaagccatacataaggcttca 338  Q
    | |||||| |||||||||||||    
T  11366612 tgaagccacacataaggcttca 11366591  T

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Target: chr8; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 81 - 229
Target Start/End: Complemental strand, 1343587 - 1343439
Alignment:
Q  81 ctatcctaacaaattcctcatcatacaattttctttccttgtttgagtggccttgtatgtgatgaaatagacaataatcaagaattaagttcaacattgc 180  Q
    |||||||||| |||| |||||||||  | |||| ||| ||||||||| | ||||  | |||||||||| |||||||||||||||||||| | || |||||    
T  1343587 ctatcctaacgaatttctcatcataagactttcgttctttgtttgagcgtcctttcacgtgatgaaatcgacaataatcaagaattaaggttaagattgc 1343488  T
Q  181 aagacttactttttcaggaagaaatattgcagaactcttggaagatcct 229  Q
    | || | |||| || ||||||| |||||| |||| ||||||||||||||    
T  1343487 aggagtgacttgttgaggaagacatattggagaagtcttggaagatcct 1343439  T

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Target: chr8; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 81 - 229
Target Start/End: Original strand, 1356000 - 1356148
Alignment:
Q  81 ctatcctaacaaattcctcatcatacaattttctttccttgtttgagtggccttgtatgtgatgaaatagacaataatcaagaattaagttcaacattgc 180  Q
    |||||||||| |||| |||||||||  | |||| ||| ||||||||| | ||||  | |||||||||| |||||||||||||||||||| | || |||||    
T  1356000 ctatcctaacgaatttctcatcataagactttcgttctttgtttgagcgtcctttcacgtgatgaaatcgacaataatcaagaattaaggttaagattgc 1356099  T
Q  181 aagacttactttttcaggaagaaatattgcagaactcttggaagatcct 229  Q
    | || | |||| || ||||||| |||||| |||| ||||||||||||||    
T  1356100 aggagtgacttgttgaggaagacatattggagaagtcttggaagatcct 1356148  T

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Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 247 - 283
Target Start/End: Complemental strand, 1353279 - 1353243
Alignment:
Q  247 ttcttgacatataaaagggcaaaccattgcaatctct 283  Q
    |||||||||||||||||||||||  ||||||||||||    
T  1353279 ttcttgacatataaaagggcaaaatattgcaatctct 1353243  T

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Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 129 - 169
Target Start/End: Complemental strand, 1353353 - 1353313
Alignment:
Q  129 ggccttgtatgtgatgaaatagacaataatcaagaattaag 169  Q
    |||||| || |||||||||| ||||||||||||||||||||    
T  1353353 ggccttttacgtgatgaaatcgacaataatcaagaattaag 1353313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 88; Significance: 3e-42; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 82 - 317
Target Start/End: Complemental strand, 13590080 - 13589845
Alignment:
Q  82 tatcctaacaaattcctcatcatacaattttctttccttgtttgagtggccttgtatgtgatgaaatagacaataatcaagaattaagttcaacattgca 181  Q
    |||| ||||||||| ||||||| ||| |||||||||||||| ||||  |||| |||   |||||||| ||||||| ||||||||| ||||||||||||||    
T  13590080 tatcgtaacaaatttctcatcaaacagttttctttccttgtctgagcagcctcgtacccgatgaaattgacaatattcaagaattgagttcaacattgca 13589981  T
Q  182 agacttactttttcaggaagaaatattgcagaactcttggaagatcctgtccctttttctgatatttcttgacatataaaagggcaaaccattgcaatct 281  Q
      |||||| | || ||||||| |||||||||| |||| |||| ||||  |||||||||   |||||||||||||||| |||||||||| |||||||||||    
T  13589980 gaacttacctctttaggaagacatattgcagagctctcggaaaatcccatccctttttgcaatatttcttgacatatgaaagggcaaaacattgcaatct 13589881  T
Q  282 ctctatccactacttggattgaatcgtcacaagttt 317  Q
    ||   ||||||  |||||||||| | ||||||||||    
T  13589880 cttgttccacttgttggattgaaccatcacaagttt 13589845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 117 - 279
Target Start/End: Original strand, 29389250 - 29389412
Alignment:
Q  117 ccttgtttgagtggccttgtatgtgatgaaatagacaataatcaagaattaagttcaacattgcaagacttactttttcaggaagaaatattgcagaact 216  Q
    ||||||||||| ||||| |||  ||||||||  ||||||||||||||| |||| ||||||| ||| ||   ||||||||||||||| |||| ||| || |    
T  29389250 ccttgtttgagcggcctggtacttgatgaaaacgacaataatcaagaactaagctcaacatagcaggagagactttttcaggaagacatatcgcacaatt 29389349  T
Q  217 cttggaagatcctgtccctttttctgatatttcttgacatataaaagggcaaaccattgcaat 279  Q
     ||||||||||| || ||||||| |  |||||||||||| |||| |||||||| |||||||||    
T  29389350 tttggaagatcccgtgcctttttgtattatttcttgacaaataagagggcaaaacattgcaat 29389412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 65; Significance: 2e-28; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 81 - 229
Target Start/End: Complemental strand, 24618006 - 24617858
Alignment:
Q  81 ctatcctaacaaattcctcatcatacaattttctttccttgtttgagtggccttgtatgtgatgaaatagacaataatcaagaattaagttcaacattgc 180  Q
    |||||| ||| ||||  ||||||||| | |||  ||||||||||||||||||||||| ||||| |||| |||||||||||||||||||| | ||||||||    
T  24618006 ctatccaaacgaatttgtcatcatacgacttttgttccttgtttgagtggccttgtacgtgatcaaatcgacaataatcaagaattaaggttaacattgc 24617907  T
Q  181 aagacttactttttcaggaagaaatattgcagaactcttggaagatcct 229  Q
    | || | |||| || ||||||| |||||| |||| ||||||||||||||    
T  24617906 aggagtgacttgttgaggaagacatattggagaagtcttggaagatcct 24617858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 51; Significance: 4e-20; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 144 - 338
Target Start/End: Original strand, 43369274 - 43369468
Alignment:
Q  144 gaaatagacaataatcaagaattaagttcaacattgcaagacttactttttcaggaagaaatattgcagaactcttggaagatcctgtccctttttctga 243  Q
    ||||| ||||||||| |||||||||| || |||||| |  ||| || | || ||||||| || ||||| || |||||||||||||||| |||||||   |    
T  43369274 gaaatcgacaataattaagaattaagctccacattgaagaactaacctgttgaggaagacatgttgcacaattcttggaagatcctgtgcctttttgcaa 43369373  T
Q  244 tatttcttgacatataaaagggcaaaccattgcaatctctctatccactacttggattgaatcgtcacaagttttaagccatacataaggcttca 338  Q
    |||||||| || |||||| ||||||| ||||||||| |||   ||||||  ||| |||||| | ||| |||||| |||||| ||||||| |||||    
T  43369374 tatttctttacgtataaatgggcaaaacattgcaatatcttgttccacttgttgaattgaaccatcagaagtttgaagccacacataagacttca 43369468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 110 - 336
Target Start/End: Original strand, 43365092 - 43365315
Alignment:
Q  110 tttctttccttgtttgagtggccttgtatgtgatgaaatagacaataatcaagaattaagttcaacattgcaagacttactttttcaggaagaaatattg 209  Q
    |||| ||||||||||||| ||||| ||   ||||||||| ||||||||| |||||| ||| || |||||| |  ||| || | || ||||||| ||| ||    
T  43365092 tttcgttccttgtttgagcggcctggtgcttgatgaaatcgacaataattaagaatcaagctccacattggagaactgacctgttgaggaagacatactg 43365191  T
Q  210 cagaactcttggaagatcctgtccctttttctgatatttcttgacatataaaagggcaaaccattgcaatctctctatccactacttggattgaatcgtc 309  Q
    || || |||||||||||||  | |||||||     | ||||| ||||||||| ||||||| ||||||||| |||   ||||||  |||| ||||| | ||    
T  43365192 cacaattcttggaagatcccatgccttttt---gcaattcttcacatataaatgggcaaaacattgcaatatcttgctccacttgttgggttgaaccatc 43365288  T
Q  310 acaagttttaagccatacataaggctt 336  Q
    | |||||| |||||| |||||||||||    
T  43365289 agaagtttgaagccacacataaggctt 43365315  T

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